View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20300_low_57 (Length: 215)

Name: NF20300_low_57
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20300_low_57
NF20300_low_57
[»] chr6 (4 HSPs)
chr6 (19-142)||(11003935-11004057)
chr6 (41-204)||(23256318-23256481)
chr6 (138-204)||(17163566-17163632)
chr6 (138-204)||(27552260-27552326)
[»] chr7 (3 HSPs)
chr7 (47-204)||(22580868-22581026)
chr7 (138-204)||(7940233-7940299)
chr7 (138-204)||(27761338-27761404)
[»] chr8 (4 HSPs)
chr8 (82-204)||(17782301-17782422)
chr8 (76-133)||(17786437-17786494)
chr8 (138-204)||(30405953-30406019)
chr8 (140-204)||(43807635-43807699)
[»] chr5 (9 HSPs)
chr5 (59-193)||(25632679-25632812)
chr5 (138-204)||(26454407-26454473)
chr5 (138-204)||(7099524-7099590)
chr5 (138-204)||(10277145-10277211)
chr5 (138-204)||(12023230-12023296)
chr5 (138-204)||(16798610-16798676)
chr5 (138-204)||(26336957-26337023)
chr5 (138-204)||(37681977-37682043)
chr5 (138-204)||(40367750-40367816)
[»] chr4 (1 HSPs)
chr4 (138-204)||(44151499-44151565)
[»] chr2 (2 HSPs)
chr2 (138-204)||(8055333-8055399)
chr2 (138-204)||(35950588-35950654)
[»] chr1 (1 HSPs)
chr1 (138-204)||(26315954-26316020)
[»] chr3 (1 HSPs)
chr3 (138-191)||(1299021-1299074)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 11003935 - 11004057
Alignment:
Q  19 taaaaacatgcaaaaacttgtgacaaactcataaccaactaaactaacttgattaacatgtgatttaaccaaacattccttgattaaatcgctaaacatt 118  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |    
T  11003935 taaaaccatgcaaaaacttgtaacaaactcataaccaactaaactaacttgattaacatgtgatttaaccaaacattccttgattatatcactaaacagt 11004034  T
Q  119 atactaacttgaattgaccaacta 142  Q
    |||||||||| |||| ||||||||    
T  11004035 atactaactt-aattaaccaacta 11004057  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 23256481 - 23256318
Alignment:
Q  41 acaaactcataaccaacta-aactaacttgattaacatgtgatttaaccaaacattccttgattaaatcgctaaac-attatactaacttgaattgacca 138  Q
    ||||||| ||||||||||| ||  |||||| |||  ||||| ||||||||||||  ||||||||||| | |||| | | |||||||||||||||| |  |    
T  23256481 acaaactaataaccaactataagcaacttggttacaatgtgttttaaccaaacaagccttgattaaaacactaatcaactatactaacttgaattaa--a 23256384  T
Q  139 actaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    || ||||||||  ||||||||  ||||||| |||||||| |||| ||| |||||||| ||||||||    
T  23256383 accaacatcctcccttaattctggtttccattttcaccaaaccagtcaagcttcttagcttgatga 23256318  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 17163632 - 17163566
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||||||||||| |||||| | ||||||||    
T  17163632 aactaacatcctcccttaattcaagtttccacttccttcataccaatcaagcttctgagcttgatga 17163566  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 27552260 - 27552326
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  27552260 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 27552326  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 22581026 - 22580868
Alignment:
Q  47 tcataaccaactaaactaacttgattaacatgtgat-ttaaccaaacattccttgattaaatcgctaaaca-ttatactaacttgaattgaccaactaac 144  Q
    ||||||| ||| ||| |||||||||||  ||||||| |||||||||||  |||||||||| || |||| || |||| |||||||||||| || |||||||    
T  22581026 tcataacaaacaaaattaacttgattactatgtgatcttaaccaaacaa-ccttgattaagtcactaatcacttattctaacttgaattaacaaactaac 22580928  T
Q  145 atcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    |||||  ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  22580927 atcctcccttaattcaagtttccactttcaccatactaattatgcttcttagcttgatga 22580868  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 7940233 - 7940299
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  7940233 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 7940299  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 27761404 - 27761338
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  27761404 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 27761338  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 17782301 - 17782422
Alignment:
Q  82 tttaaccaaacattccttgattaaatcgctaaacattatactaacttgaattgaccaactaacatcctttcttaattcaagtttccactttcaccatacc 181  Q
    ||||||||||||  | ||||||||| |  ||| || || ||||||||||||| || ||||||||||||  ||||||||||||||||||||||||||||||    
T  17782301 tttaaccaaacaagctttgattaaaacattaatcactacactaacttgaattaac-aactaacatcctcccttaattcaagtttccactttcaccatacc 17782399  T
Q  182 aatcatgcttcttaacttgatga 204  Q
    ||||| |||||||| ||||||||    
T  17782400 aatcaagcttcttagcttgatga 17782422  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 17786437 - 17786494
Alignment:
Q  76 atgtgatttaaccaaacattccttgattaaatcgctaaacattatactaacttgaatt 133  Q
    ||||| |||||||||||| |||||||||||| | |||| ||| |||||||||||||||    
T  17786437 atgtgttttaaccaaacaatccttgattaaaacactaatcatcatactaacttgaatt 17786494  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 30405953 - 30406019
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  30405953 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 30406019  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 43807635 - 43807699
Alignment:
Q  140 ctaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  43807635 ctaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 43807699  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 25632812 - 25632679
Alignment:
Q  59 aaactaacttgattaacatgtgatttaaccaaacattccttgattaaatcgctaaacat-tatactaacttgaattgaccaactaacatcctttcttaat 157  Q
    |||| |||||| |||  ||||| ||||||||||||  ||||||||||| | |||| ||  |||||||||||||||| |  ||||||||||||| ||||||    
T  25632812 aaacaaacttggttactatgtgttttaaccaaacaagccttgattaaaacactaatcaactatactaacttgaattaa--aactaacatccttccttaat 25632715  T
Q  158 tcaagtttccactttcaccataccaatcatgcttct 193  Q
    |||||||| |||| ||||||||||||||| ||||||    
T  25632714 tcaagttttcactctcaccataccaatcaggcttct 25632679  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 26454407 - 26454473
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||| ||||  ||||||||||||||||||||  ||||||||||||||||| |||| ||||||||    
T  26454407 aactaacttcctcccttaattcaagtttccacttcaaccataccaatcatgctccttagcttgatga 26454473  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 7099524 - 7099590
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  7099524 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 7099590  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 10277211 - 10277145
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    |||||||||||| ||||||||| ||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  10277211 aactaacatcctctcttaattcgagtttccacttccttcattccaatcaagcttctgagcttgatga 10277145  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 12023296 - 12023230
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  12023296 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 12023230  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 16798676 - 16798610
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  16798676 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 16798610  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 26336957 - 26337023
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  26336957 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 26337023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 37682043 - 37681977
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  37682043 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 37681977  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 40367750 - 40367816
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  40367750 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 40367816  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 44151565 - 44151499
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  44151565 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 44151499  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 8055399 - 8055333
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  8055399 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 8055333  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 35950588 - 35950654
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  35950588 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctaagcttgatga 35950654  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 26316020 - 26315954
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgcttcttaacttgatga 204  Q
    ||||||||||||  |||||||||||||||||||| |  ||| ||||||| |||||| | ||||||||    
T  26316020 aactaacatcctcccttaattcaagtttccacttccttcattccaatcaagcttctgagcttgatga 26315954  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 1299074 - 1299021
Alignment:
Q  138 aactaacatcctttcttaattcaagtttccactttcaccataccaatcatgctt 191  Q
    ||||||||||||  ||||||||||||||||| ||  ||||||||||||| ||||    
T  1299074 aactaacatcctcccttaattcaagtttccaattctaccataccaatcaagctt 1299021  T

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