View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_6 (Length: 579)
Name: NF20300_low_6
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 14 - 562
Target Start/End: Original strand, 19346759 - 19347307
Alignment:
| Q |
14 |
gaagttggtaatgcagagaagttcaagccttttaaatccaacacctgtaggctttccataccctcaaaaacaatatttgagatctctacagagggttcca |
113 |
Q |
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| T |
19346759 |
gaagttggtaatgcagacaagttcaagccttttaaatccaacacctgtaggctttccataccctcaaaaacaatatttgagatctctacagagggttgca |
19346858 |
T |
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| Q |
114 |
cactctcgaagaagaaaaacttagcattaggacaatctaacctttcaggaagcttgcggacattacagccatataagatgatctgtgagctttttcgaaa |
213 |
Q |
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| T |
19346859 |
cactctcgaagaagaaaaacttagcattaggacaatctaacctttcaggaagcttgcggacattacagccatataagatgatctgtgagctttctcgaaa |
19346958 |
T |
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| Q |
214 |
atcctttgttggccactccttcaagtcagatagtttttccttcacaaatacatgttgatccctaagtgctatggaaactgctacatcacgaacatagtta |
313 |
Q |
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| T |
19346959 |
atcctttgttggccactccttcaagtcagatagtttttccttcacaaatacatgttgatccctaagtgctatggaaactgctacatcacgaacatagtta |
19347058 |
T |
|
| Q |
314 |
ttcatttggatcttcccactcgtgttacatttatccaacaaacaagaagcctgcagagataggattatactgtgaagtgtgtttcttgcatgatacacag |
413 |
Q |
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| T |
19347059 |
ttcatttggatcttcccactcgtgttacatttatccaacaaacaagaagcctgcagagataggattatactgtgaagtgtgtttcttgcatgatacacag |
19347158 |
T |
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| Q |
414 |
tatttatatccttgaaaatgttcaaacccatagcaactttcagtaagtactctgtatcaatatcttgtagtgtagaagaaagcaagaagatatccttcat |
513 |
Q |
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| T |
19347159 |
tatttatatctttgaaaatgttcaaacccatagcaactttcagtaagtactctgtatcaatatcttgtagtgtagaagaaagcaagaagatatccttcat |
19347258 |
T |
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| Q |
514 |
tgcttgattcactaacaagttgtaactcaactccaaagtagaataagtt |
562 |
Q |
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| T |
19347259 |
tgcttgactcactaacaagttgtaactcaactccaaagtagaataagtt |
19347307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 562
Target Start/End: Complemental strand, 13503642 - 13503572
Alignment:
| Q |
492 |
aaagcaagaagatatccttcattgcttgattcactaacaagttgtaactcaactccaaagtagaataagtt |
562 |
Q |
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|||||||||||| |||||||||| | | | || |||| ||||||||||||| ||||||| |||||||||| |
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| T |
13503642 |
aaagcaagaagagatccttcatttcatcactctctaatgagttgtaactcaattccaaagcagaataagtt |
13503572 |
T |
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