View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_7 (Length: 571)
Name: NF20300_low_7
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 557
Target Start/End: Original strand, 47506367 - 47506897
Alignment:
| Q |
17 |
acaaggtactccttaattgcaactgttttattggcccaaaggaaaattgatgacaatgttttactaaattagaaaattgaaaaagaaaggatttacagca |
116 |
Q |
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| T |
47506367 |
acaaggtactccttaattgcaactgttttattggcccaaaggcaaattgatgacaatgttttactaaattagaaaattgaaaaagaaaggatttacagca |
47506466 |
T |
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| Q |
117 |
tctaaatatgtatataggtagagttgaattgtggaaagagctgtcatgcannnnnnnntaaaatgaaatgtgaccccaaaaaactcaatgaaggaagggg |
216 |
Q |
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| T |
47506467 |
tctaaatatgtatataggtagagttgaattgtggaaagagctgtcatgcaggggggggtaaaatgaaatgtgaccccaaaaaactcaatgaaggaagggg |
47506566 |
T |
|
| Q |
217 |
ataagtgaacatgattgttttgtggtgggtgtgcattatacatacttataaaaaatttctttctgacacacttataataacgagtttatataccccacaa |
316 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47506567 |
ataagtgaacatgattgttttgtggtgggtatgcattatac----ttataaaaaatttctttctgacacacttataataacgagtttatataccccacaa |
47506662 |
T |
|
| Q |
317 |
ccactaactcccataccacttatttcaacaaattaaaagtgtgtctgtttcaattcaatcatcgatcttatggtataataagagagtttgatattcacaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
47506663 |
ccactaactcccataccacttatttcaacaaattaaaagtgtgtctgtttcaattcaatcatc----ttatggtataataagag--tttgatattcacaa |
47506756 |
T |
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| Q |
417 |
atcccaatgctttgactgtccctttctcttctcttgctgctattcattcaaatttgtcactcccgaaacccacggggcagtgtgctcacatggatgaagt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47506757 |
atcccaatgctttgactgtccctttctcttctcttgctgctattcattcaaatttgtcactcccgaaacccacggggcagtgtgctcacatggatgaagt |
47506856 |
T |
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| Q |
517 |
gagtatccaccattattaacataaccttgctggtgtctgtg |
557 |
Q |
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| T |
47506857 |
gagtatccaccattattaacataaccttgctggtgtctgtg |
47506897 |
T |
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