View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_8 (Length: 525)
Name: NF20300_low_8
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 163 - 508
Target Start/End: Original strand, 54672447 - 54672790
Alignment:
| Q |
163 |
tgagcacgcaccaagaattgtatgctatcatacaatcactgcagcatgtgctcactctcttctgtcaatatctctactccactgtgtgtcccctcttctg |
262 |
Q |
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| T |
54672447 |
tgagcacgcaccaagaattgtatgctatcatacaatcactgcagcatgtgctcactctcttctgtcaatatctctactccactgtgtgtcccctcttcta |
54672546 |
T |
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| Q |
263 |
aatattcaatagcatataatggcactggcagaagctaccacgtatattaattgttcatagcaaaacatccacaaatgttgattcactctttcttctctat |
362 |
Q |
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| T |
54672547 |
aatattcaatagcatataatggcactggcagaagctaccacgtatattaattgttcatagcaaaacatccacaaatgttgattcactctttcttctctat |
54672646 |
T |
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| Q |
363 |
tttctaatttctaccactctaatgaatgagtcagatcagatctgcaaactcatatcctcctatttttggcacagtcctatgctgcacatacctaagattt |
462 |
Q |
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| T |
54672647 |
tttctaatttctaccactctaatgaatgagtcagatcagatctgcaaactc--atcctcctatttttggcacagtcctatgctgcacatacctaagattt |
54672744 |
T |
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| Q |
463 |
caactataatatctatcactcaaaatggcctattttgatctatatg |
508 |
Q |
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| T |
54672745 |
caactataatatctatcactcaaaatggcctattttgatctatatg |
54672790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 54672322 - 54672382
Alignment:
| Q |
38 |
cagaagatggattaatggagtggaatcatcagaaaacttgattaaagagatgagatctatg |
98 |
Q |
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| T |
54672322 |
cagaagatggattaatggagtggaatcatcagaaaacttgattaaagagatgagatctatg |
54672382 |
T |
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