View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20300_low_9 (Length: 517)
Name: NF20300_low_9
Description: NF20300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20300_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Complemental strand, 40289134 - 40288652
Alignment:
| Q |
16 |
atgaacaccatacacaccatccatctgaagtgtcgatgctacatatcttatgtatgataagaagcaacaaaaaagactagaagcaattaacatttaggat |
115 |
Q |
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| T |
40289134 |
atgaacaccatacacaccatccatatgaagtgtcgatgctacatatcttatgtatgataagaagcaacaaaa--gactagaagcaattaacatttaggat |
40289037 |
T |
|
| Q |
116 |
nnnnnnnnnnncgtacccagaaacaccatcagccttgacaaacttgggtaacccatcagacaaaccacgagcaaagccaggctgagtttgtacacgaact |
215 |
Q |
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| T |
40289036 |
aaaaaaaaaaa-gtacccagaaacaccatcagccttgacaaacttgggtaacccatcagacaaaccacgagcaaagccaggctgagtttgtacacgaact |
40288938 |
T |
|
| Q |
216 |
ttgactgcctccataggacaaagtgcacaatcagcaataacttctgctgaagcagaaccagctagatatatgaaagttttgtacttgactgcattctctg |
315 |
Q |
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| T |
40288937 |
ttgacagcctccataggacaaagtgcacaatcagcaataacttctgctgaagcagaaccagctagatatatgaaagttttgtacttgactgcattctctg |
40288838 |
T |
|
| Q |
316 |
gtccagcaagatctgagtaatactttttgaagaactcataaaatccaaacttgcatgctccttgagcactgtaaccaagcaaagttggcacccagccttt |
415 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40288837 |
gtccagcaagatctgagtaatactttttgaagaactcgtaaaatccaaacttgcatgctccttgagcactgtaaccaagcaaagttggcacccagccttt |
40288738 |
T |
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| Q |
416 |
gaagaaacctctaacaccctgctccttaagtaaaactccaaatcctgaactgatgctcttatactttgcagggtcaatctgaaaat |
501 |
Q |
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| T |
40288737 |
gaagaaacctctaacaccctgctccttaagtaaaactccaaatcctgaactgatgctcttatactttgcagggtcaatctgaaaat |
40288652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 186 - 499
Target Start/End: Original strand, 32260887 - 32261200
Alignment:
| Q |
186 |
gcaaagccaggctgagtttgtacacgaactttgactgcctccataggacaaagtgcacaatcagcaataacttctgctgaagcagaaccagctagatata |
285 |
Q |
| |
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||||| |||||||||||||| ||||| ||||| || ||||| | || ||||||||| ||||||||||| || || || || |||||||| || || | |
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| T |
32260887 |
gcaaaaccaggctgagtttgaacacggactttaacagcctcgaatgggcaaagtgcaacgtcagcaataacctcagcagatgctgaaccagcaaggtaga |
32260986 |
T |
|
| Q |
286 |
tgaaagttttgtacttgactgcattctctggtccagcaagatctgagtaatactttttgaagaactcataaaatccaaacttgcatgctccttgagcact |
385 |
Q |
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| T |
32260987 |
tcaaggtcttgtacttggctgcatactcggggccagcaatatcagaatagtacttcttaaagaactcatagaacccaaatttgcaagcaccctgggcact |
32261086 |
T |
|
| Q |
386 |
gtaaccaagcaaagttggcacccagcctttgaagaaacctctaacaccctgctccttaagtaaaactccaaatcctgaactgatgctcttatactttgca |
485 |
Q |
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||||||||| || ||||||||||| || ||| || || |||| ||||||||||| | ||||||||||| ||||| ||||||||| ||||| ||| |
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| T |
32261087 |
gtaaccaagtaatgttggcacccatccgcggaaaaatcccttaactccctgctccttgaacaaaactccaaaccctgatgagatgctcttgtacttggca |
32261186 |
T |
|
| Q |
486 |
gggtcaatctgaaa |
499 |
Q |
| |
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|||||||||||||| |
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| T |
32261187 |
gggtcaatctgaaa |
32261200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 499
Target Start/End: Complemental strand, 10600169 - 10599829
Alignment:
| Q |
159 |
ttgggtaacccatcagacaaaccacgagcaaagccaggctgagtttgtacacgaactttgactgcctccataggacaaagtgcacaatcagcaataactt |
258 |
Q |
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||||| || |||||||| | ||| | |||||| ||||| |||||||| || | ||| || | |||||| | |||||||||||| |||||||||||| | |
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| T |
10600169 |
ttgggcaatccatcagaaagacctctagcaaaaccaggttgagtttgaactctaaccttaattgcctcaaatggacaaagtgcaacatcagcaataacct |
10600070 |
T |
|
| Q |
259 |
ctgctgaagcagaaccagctagatatatgaaagttttgtacttgactgcattctctggtccagcaagatctgagtaatactttttgaagaactcataaaa |
358 |
Q |
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| || ||||| || ||||| || || | || || || ||||| ||||| ||||| ||| ||| |||||| || |||| ||||| ||||||||| |
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| T |
10600069 |
cagcagaagctgatccagcaaggtagactaatgtcttatactttgtagcattttctggaccaacaacatctgaataggacttcttgaaatactcataaag |
10599970 |
T |
|
| Q |
359 |
tccaaacttgcatgctccttgagcactgtaaccaagcaaagttggcacccagcctttgaagaaacctctaacaccctgctccttaagtaaaactccaaat |
458 |
Q |
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||| | ||| | || ||||| |||||||||||||| || ||||| |||| ||| |||| || ||| ||| || || ||||| || | ||||||||| |
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| T |
10599969 |
cccatatttgaaagcaccttgtgcactgtaaccaagaaatgttggtgcccatcctctgaaaaatcctttaaatccttgttccttgagcatcactccaaat |
10599870 |
T |
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| Q |
459 |
cctgaactgatgctcttatactttgcagggtcaatctgaaa |
499 |
Q |
| |
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||||| |||||||| ||||| ||||||||||||||||| |
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| T |
10599869 |
cctgaggaaatgctcttgtacttagcagggtcaatctgaaa |
10599829 |
T |
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