View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_high_1 (Length: 520)
Name: NF20301_high_1
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 177 - 448
Target Start/End: Original strand, 12669523 - 12669795
Alignment:
| Q |
177 |
tagaaccaatttgcacattacaatttgcaaggtccnnnnnnn-catccaattttcaagccattaatggcgaaaatggaactagctcaggagggatagaca |
275 |
Q |
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| T |
12669523 |
tagaaccaatttgcacattacaatttgcaaggtccttttttttcatccaattttcaagccattaatggcgaaaatggaactagctcaggagggatagaca |
12669622 |
T |
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| Q |
276 |
agaaaagagagaatgagttgggtggtaaaagggaaaaacggagacgaaactctatatcgacaaatttcgatatagcgtcttccacaaaagcaaaaacaaa |
375 |
Q |
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| T |
12669623 |
agaaaagagagaatgagttgggtggtaaaagggaaaaacggagacgaaactctatatcaacaaatttcgatatagcgtcttccacaaaagcaaaaacaaa |
12669722 |
T |
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| Q |
376 |
gaaaaccgacacagagtgaggtcttacaaggtcaagaaaaggtcttacaaggtcaagaagacacaagtagagt |
448 |
Q |
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| T |
12669723 |
gaaaaccgacacagagtgaggtcttacaaggtcaagaaaaggtcttacaaggtcaagaagacacaagtagagt |
12669795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 12669365 - 12669475
Alignment:
| Q |
19 |
aaagtgaattgcttgataacacacatgcacttaagaaaattttgtttaaattttattgtgaaggatattaaggacgtgatgaaagcatgctagctacaat |
118 |
Q |
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| T |
12669365 |
aaagtgaattgcttgataacatacatgcacttaagaaaattttatttaaattttattgtgaaggatattaaggacatgatgaaagcatgctagctacaat |
12669464 |
T |
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| Q |
119 |
tactacatttc |
129 |
Q |
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| T |
12669465 |
tactacatttc |
12669475 |
T |
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