View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_high_10 (Length: 315)
Name: NF20301_high_10
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 12923156 - 12923469
Alignment:
| Q |
1 |
tctctatggcattagatgaagcaggataatgcagccacaatatttcaaaaaatataattaatgctttcaaagatcccaattaaacccatgtcctgcctcc |
100 |
Q |
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| T |
12923156 |
tctctgtggcattagatgaagcaggataatgcagcaacaatatttcaaaaattataattaatgctttcaaagatcccaattaaacccatgtcctgcctcc |
12923255 |
T |
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| Q |
101 |
ttattctcacttttgnnnnnnnntgaataggtgatcagcatcacaactcacaattgatcactaccacaaactatctttataaaaaataatcagcttcttg |
200 |
Q |
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| T |
12923256 |
ttattctcacttttgaaaaaaaatgaataggtgatcagcattacaactcacaattgatcactaccacaaactatctttataaaaaataatcagcttcttg |
12923355 |
T |
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| Q |
201 |
atcgcatctgtcttgcctacttgtttcnnnnnnngctcccatatttggnnnnnnnntccaggctaaagatctcaatgattatataacaaattataaaaaa |
300 |
Q |
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| T |
12923356 |
attgcatctgtcttgcctacttgtttctttttttgctcccatatttgg-aaaagaatccaggctaaagatctccatgattatataacaaattattaaaaa |
12923454 |
T |
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| Q |
301 |
tgttttggtctgtct |
315 |
Q |
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||||||||||||||| |
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| T |
12923455 |
tgttttggtctgtct |
12923469 |
T |
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