View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_high_11 (Length: 246)
Name: NF20301_high_11
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 14569390 - 14569617
Alignment:
| Q |
2 |
aacttctggtgatcttagagcaaggaatattgccatagcatcatctatagaaataaaaccaatcacaatattatgatcaaagtcaaagaaacatggaatt |
101 |
Q |
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| T |
14569390 |
aacttctggtgatcttagagcaaggaatattgccatagcatcatctatagaaataaaaccaatcacaatattatgatcaaagtcaaagaaacatggaatt |
14569489 |
T |
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| Q |
102 |
tgaaaaatcaaacatagacaaagagc-nnnnnnnnnnnnnngtatatgttgtgtattaattactaatatttaccgattccagggtcagtatcaattatga |
200 |
Q |
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| T |
14569490 |
tgaaaaatcaaacatagacaaagagcaaaaaaaaaaaaaaagtatatgttgtgtattaattgctattatttaccgattccagggtcagtatcaattatga |
14569589 |
T |
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| Q |
201 |
tcttctttggttccttttgggttgccat |
228 |
Q |
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| T |
14569590 |
tcttctttggttccttttgggctgccat |
14569617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 14577733 - 14577842
Alignment:
| Q |
2 |
aacttctggtgatcttagagcaaggaatattgccatagcatcatct-----atagaaataaaaccaatcacaatattatgatcaaagtcaaagaaacatg |
96 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| | | ||| | || |||| ||||||||||||||||||||||||||||||| |
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| T |
14577733 |
aacttctggtgatcttagagcaagaaatattgccatagcatcatctgcacaaaaaaaaaataatcaattacaatattatgatcaaagtcaaagaaacatg |
14577832 |
T |
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| Q |
97 |
gaatttgaaa |
106 |
Q |
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||||||||| |
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| T |
14577833 |
aaatttgaaa |
14577842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 14577883 - 14577944
Alignment:
| Q |
167 |
tatttaccgattccagggtcagtatcaattatgatcttctttggttccttttgggttgccat |
228 |
Q |
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| T |
14577883 |
tatttaccgattccagggtcggtgtcgattatgatcttctttggttcggtttgagttgccat |
14577944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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