View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_high_12 (Length: 231)
Name: NF20301_high_12
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 47048352 - 47048148
Alignment:
| Q |
14 |
catgaatgatcttgaaaacgataaactcgaggaaagtgaataattacttaccatcaagataaacagaaccattcgagttaaaaccaatgctaccgggata |
113 |
Q |
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| T |
47048352 |
catgaatgatcttgaaaacgataaactcgaggaaagtgaataattacttaccatcaagataaacagaaccattcgagttaaaaccaatgctaccgggata |
47048253 |
T |
|
| Q |
114 |
actcccaggaactttcaaaacaacaggaccaccaactgtcaaacccaacgaaaacataacagaatcactcttcttcccaccattctctctaccatcaacc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
47048252 |
actcccaggaactttcaaaacaacaggaccaccaactgtcaaacccaacgaaaacataacagaatcagtcttcttcccgccattctctctaccatcaacc |
47048153 |
T |
|
| Q |
214 |
ttcat |
218 |
Q |
| |
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||||| |
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| T |
47048152 |
ttcat |
47048148 |
T |
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