View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_high_3 (Length: 422)
Name: NF20301_high_3
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 23152477 - 23152074
Alignment:
| Q |
20 |
cttgattggacgagccaaaaaatttaaattttagtaatttgaaatactaaacttgaattttgaccgtccgatctaaagtgaactgtcctgactacatgaa |
119 |
Q |
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| T |
23152477 |
cttgattggacgagccaaaaaatttaaattttagtaatttgaaatattaaacttgaattttgaccgtctgatctaaagtgaactgtcttgactacatgaa |
23152378 |
T |
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| Q |
120 |
tacaagaaatgtttat------gagtttgatttttgtactaattttgctttcgtttctgattttgtgataacaggctcgacttagcgacgcagctgcaaa |
213 |
Q |
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| T |
23152377 |
tgcaagaaatgtttataattatgagtttgatttttgtactaattttgctttcgtttctgattttgtgataacaggctcgacttagcgacgcagctgcaaa |
23152278 |
T |
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| Q |
214 |
ggctgtgaaaaaattgttgccagaatctgcaaataatgatttatctagcaagtgttcatgggcagatcatgttagatttatctatccttggtcttctgct |
313 |
Q |
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| T |
23152277 |
ggctgtgaaaaaattgctgccagaatctgcaaataatgatttatctagcaagtgttcatgggcagatcatgtgaggtttatctatccttggtcgtctgct |
23152178 |
T |
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| Q |
314 |
ttgcactttgctgatactcctgactctgtttgcagttacaacaacaacagtaagcaacaaccatcatttatactctcttatcattgttttatgttcatct |
413 |
Q |
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| T |
23152177 |
ttgcactttgctgatactcctgactctgtttgcagttacaataacaaaagtaagcagcaacaaacttttatattctcctatcattgttttatgttcattt |
23152078 |
T |
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| Q |
414 |
cact |
417 |
Q |
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| T |
23152077 |
cact |
23152074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 204 - 354
Target Start/End: Complemental strand, 23135811 - 23135661
Alignment:
| Q |
204 |
cagctgcaaaggctgtgaaaaaattgttgccagaatctgcaaataatgatttatctagcaagtgttcatgggcagatcatgttagatttatctatccttg |
303 |
Q |
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| T |
23135811 |
cagctgctaaggctgtgaaaaaattgttgccagaatctgcaaacaatgatttatctagcaagtgttcatgggcagatcatgtgaggtttatctttcagtg |
23135712 |
T |
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| Q |
304 |
gtcttctgctttgcactttgctgatactcctgactctgtttgcagttacaa |
354 |
Q |
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| T |
23135711 |
gtcttcccctctacactttgctgatacacctgacaatgtttgcacttacaa |
23135661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 49866654 - 49866626
Alignment:
| Q |
302 |
tggtcttctgctttgcactttgctgatac |
330 |
Q |
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| T |
49866654 |
tggtcttctgctttgcactttgctgatac |
49866626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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