View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_high_8 (Length: 344)
Name: NF20301_high_8
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 32434373 - 32434046
Alignment:
| Q |
1 |
ttgttgaggaggagaccaatgatcaatgagtttcaagatatcgattccaacagggtttgaggctttgacgcgtagatactcatcgtcgccgagtacagct |
100 |
Q |
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| T |
32434373 |
ttgttgaagaggagaccaatgatcaatgagtttcaagatatcgattccaacagggtttgaggctttgacgcgtagatactcatcgtcgccgagtacagct |
32434274 |
T |
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| Q |
101 |
ttgtacatggaaaggaaatcgatgacgggaacggtgagtgtgccgtccatgtcgaaaacgacacctcggaggcgcgttttgggggttaagtgtgatgaca |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32434273 |
ttgtacatggaagggaaatcgatgacgggaacggtgagtgtgccgtccatgtcgaaaacgacgcctcggaggcgcgttttgggggttaagtgtgatgaca |
32434174 |
T |
|
| Q |
201 |
tgatgcgagggaagaggaggaaagcttttgtggaagagagcaatggcatctagtgaagtagagtagaatagagag---------atattatgattactat |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
32434173 |
tgatgcgagggaagaggaggaaagcttttgtggaagagagcaatggcatctagtgaagtagagtagaatagagagataatgagaatattatgattaatat |
32434074 |
T |
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| Q |
292 |
ttgtgatgctgctgattttgggtgggtg |
319 |
Q |
| |
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||||||||||| |||||||||||||||| |
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| T |
32434073 |
ttgtgatgctgatgattttgggtgggtg |
32434046 |
T |
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