View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_low_11 (Length: 296)
Name: NF20301_low_11
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 125 - 283
Target Start/End: Original strand, 10556487 - 10556647
Alignment:
| Q |
125 |
aaattccttcaatatcaaaagcaaagggaataatcttcagtgtta--actccttattatatacacctttctaactacaaaactcaaactccactatctat |
222 |
Q |
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| T |
10556487 |
aaattccttcaataacaaaagcaaagggaataatcttcagtgttcccactccttattatatacacctttctaactacaaaacttaaactccactatctat |
10556586 |
T |
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| Q |
223 |
cacaccctcttatttcctcaaagcctttttcccacatgcttcctacatttttcatttggtt |
283 |
Q |
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| T |
10556587 |
cacaccctcttatttcctcaaagcctttttccctcatgcttcctacatttttcatttggtt |
10556647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 10554164 - 10554272
Alignment:
| Q |
19 |
atgtaggttaaagtggctaatgggcaatgactgcaaatgcctcagtttaagggatcttatattttattgcttaaaaggccggctaggcttttctacaatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
10554164 |
atgtaggttaaagtggctaatgggcaatgactgcaaatgcctcagtttaagggatcttgtattttattgcttaaaaggccggctaggcttttctataatc |
10554263 |
T |
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| Q |
119 |
atagttaaa |
127 |
Q |
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||||||||| |
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| T |
10554264 |
atagttaaa |
10554272 |
T |
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