View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20301_low_14 (Length: 210)
Name: NF20301_low_14
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 32798416 - 32798583
Alignment:
| Q |
16 |
aaatgaacaatccttttgattgttcacaccgtaatttgatacggttaggtagtatatgttgaatattt-aatcattttgttttacctcggaatgcctgcc |
114 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |||| |||| ||||||| |||| ||||||| ||| || ||||||||||||||| ||||||| || | |
|
|
| T |
32798416 |
aaatgaacaacccttttggttgttcacaccgtattttgctacgtttaggtaatataagttgaattttttaaacattttgttttaccttggaatgcgtgtc |
32798515 |
T |
|
| Q |
115 |
aaattgaattgtgctttgagagttatacggtgtaaaataagttgtaggttttgggatgtcaaaataac |
182 |
Q |
| |
|
| ||||||| || ||| | |||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
32798516 |
agcttgaattatgtcttgggggttatacggtgtggaataagttgtaggttttgggttgtcaaaataac |
32798583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 46205778 - 46205736
Alignment:
| Q |
139 |
atacggtgtaaaataagttgtaggttttgggatgtcaaaataa |
181 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
46205778 |
atacggtgtgaaataagttgtaggttttggattgtcaaaataa |
46205736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 8841349 - 8841277
Alignment:
| Q |
117 |
attgaattgtgctttgagagttatacggtgtaaaataagttgtaggttttgggatgtcaaaataacactgctc |
189 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8841349 |
attgaattgtgccttgagagttatacgttgtaaaataagttgtaggttttgggatgtcaaaataacactgctc |
8841277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 24621350 - 24621189
Alignment:
| Q |
16 |
aaatgaacaatccttttgattgttcacaccgtaatttgatacggttaggtagtatatgttgaatattt-aatcattttgttttacctcggaatgcctgcc |
114 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||| |||||||| |||||| | || | |||| ||| ||||||||| ||| |||| ||||||| |||| |
|
|
| T |
24621350 |
aaatgaacaa-cattttggttgttcacaccgtattttgatacagttaggcacggtaaatagaattttttaatcattttatttgaccttggaatgcgtgcc |
24621252 |
T |
|
| Q |
115 |
aaattgaattgtgctttgagagttatacggtgtaaaataagttgtaggttttgggatgtcaaa |
177 |
Q |
| |
|
| || |||||||| ||| |||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
24621251 |
agcttaaattgtgccttggaagttatacggcgtggaataagttgtaggttttgggatgtcaaa |
24621189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University