View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_low_4 (Length: 375)
Name: NF20301_low_4
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 44898964 - 44899329
Alignment:
| Q |
17 |
caattggagttggtatacatgctatttatcatcttgcttgtgactttcctagtcttattcacgcgaatagtgaaaagtacgagctcatggaaccattttt |
116 |
Q |
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| T |
44898964 |
caattggagttggtatacatgctatttatcatcttgcttgtgactttcctagtcttattcacgcgaatagtgaaaagtacgagctcatggaaccattttt |
44899063 |
T |
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| Q |
117 |
tggaaagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataatgattgttttaatgacaattgccttcacgttggct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44899064 |
tggaaagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataatggttgttttaatgacaattgccttcacgttggct |
44899163 |
T |
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| Q |
217 |
agtccttggttaaggaaaagaaaggttggagaaccc------------------agaaaggtcgaaaaacccaaaacacccaattgcctccaacccctca |
298 |
Q |
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| T |
44899164 |
agtccttggttaaggaaaagaaaggttggagaacccagaaaggacaaagaaccgagaaaggacgaagaacccaaaacacccaattgcctccaacccctca |
44899263 |
T |
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| Q |
299 |
ttaatataactggtttcaatgccttttggtactctcatcatctctttgtatttgtctatgcccttt |
364 |
Q |
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| T |
44899264 |
ttaatataactggtttcaatgccttttggtactctcatcatctctttgtatttgtctatgcccttt |
44899329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 44885580 - 44885912
Alignment:
| Q |
17 |
caattggagttggtatacatgctatttatcatcttgcttgtgactttcctagtcttattcacgcgaatagtgaaaagtacgagctcatggaaccattttt |
116 |
Q |
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| T |
44885580 |
caattggagttggtatacatgctatttatcatcttgcttgcgactttccacgccttcttcatgcaaatagtgaaaagtacaagctcatggaaccattttt |
44885679 |
T |
|
| Q |
117 |
tggaaagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataatgattgttttaatgacaattgccttcacgttggct |
216 |
Q |
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| T |
44885680 |
tggaaagcaagcaacaaattattggcattttgtgaaatcatgggaaggagtaacagggattataatggttgttttaatggcaatagccttcacgacggct |
44885779 |
T |
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| Q |
217 |
agtccttggttaaggaaaagaaaggttggagaacccagaaaggtcgaaaaacccaaaacacccaattgcctccaacccctcattaata---taactggtt |
313 |
Q |
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| T |
44885780 |
agtccttggttaaggaaa------------------agaaaggtcgaagaacccaaaacacccaattgcctccaacccctcctcaatagtgtaactggtt |
44885861 |
T |
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| Q |
314 |
tcaatgccttttggtactctcatcatctctttgtatttgtctatgcccttt |
364 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
44885862 |
tcaatgtcttttggtacactcatcatctctttgtatttgtctatgcacttt |
44885912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 44915223 - 44915445
Alignment:
| Q |
21 |
tggagttggtatacatgctatttatcatcttgcttgtgactttcctagtcttattcacgcgaatagtgaaaagtacgagctcatggaaccattttttgga |
120 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||| | ||| |||| || ||||||||||||||| ||||||||||||||||||||||| |
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| T |
44915223 |
tggagttggtatacatgctatttatcatcttacttgcgactttcctcgccttcttcatgcaaatagtgaaaagtacaagctcatggaaccattttttgga |
44915322 |
T |
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| Q |
121 |
aagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataatgattgttttaatgacaattgccttcacgttggctagtc |
220 |
Q |
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| T |
44915323 |
aagcaaccaacaagttattggcattttgtgaaatcatgggaaggagtaacggggattgtaatggttgttttaatgacaatagccttcacactggctagtc |
44915422 |
T |
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| Q |
221 |
cttggttaaggaaaagaaaggtt |
243 |
Q |
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||||||| |||||| ||| |||| |
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| T |
44915423 |
cttggttcaggaaaggaagggtt |
44915445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 364
Target Start/End: Original strand, 44915456 - 44915530
Alignment:
| Q |
290 |
aacccctcattaatataactggtttcaatgccttttggtactctcatcatctctttgtatttgtctatgcccttt |
364 |
Q |
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||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44915456 |
aacccctcaatagtctaactggtttcaatgccttttggtactctcatcatctctttgtatttgtctatgcccttt |
44915530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 39982861 - 39983050
Alignment:
| Q |
17 |
caattggagttggtatacatgctatttatcatcttgcttgtgactttcctagtcttattcacgcgaatagtgaaaagtacgagctcatggaaccattttt |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||| | || |||| || | | |||||||||| |||| || || || ||||| |
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| T |
39982861 |
caattggtgttggtatacatgctatttatcatcttgcttgtgattttcctcgcattcttcatgcaagcaatgaaaagtacaagctgattgagcctttttt |
39982960 |
T |
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| Q |
117 |
tggaaagcaagcaacaagttattggcattttgtgaaatcatgggaaggagtaacagggattataatgattgttttaatgacaattgcctt |
206 |
Q |
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||| || || |||||| ||| ||||||||||| ||||| |||||||| |||||||| ||| ||||| |||| ||||| |||| ||||| |
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| T |
39982961 |
cggagagaaaccaacaaattactggcattttgtcaaatcttgggaaggggtaacaggaattctaatggttgtgctaatggcaatagcctt |
39983050 |
T |
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