View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_low_5 (Length: 373)
Name: NF20301_low_5
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 41908061 - 41908399
Alignment:
| Q |
11 |
caaagggagagaaagaattaagcaagattacacattcagtgatatgcccttaaagctaaattaactaatgacagcaatataataatcttttcagataaga |
110 |
Q |
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| T |
41908061 |
caaaaggagagagagaattaagcaagattacacattcagtgatatgcccttaaagctaaactaactaatgacagcaatataataatcttttcagataaga |
41908160 |
T |
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| Q |
111 |
gacagacaaaaatcaaggagtaacagaaagtttgccccgcattccaacattgattaaagaaaaaattcactgttttcaactaaacatgatgcagtactca |
210 |
Q |
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| T |
41908161 |
gacggacaaaaatcaaggagtaacagaaagtttgccccgcattccaacattgattaaagaaaatattcactgttttcaactaaacatgatgcagtactca |
41908260 |
T |
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| Q |
211 |
ggtttatacatatcaactcaaacataaataagttccgatgcaaactcatgtcaaaataatgtattccaaagcataaccataagaaactcaggtttataac |
310 |
Q |
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| T |
41908261 |
ggtttatacatatcaactcaaacataaataagttctgatgcaaactcatgtcaaaataatgtattccaaagcataaccttaagaaa---------atagc |
41908351 |
T |
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| Q |
311 |
atttattgcattgcgggaaatgatgaaatactcacactgatagctttc |
358 |
Q |
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| T |
41908352 |
atttattgcattgcgggaaatgatgaaatactcacactgatagctttc |
41908399 |
T |
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