View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20301_low_6 (Length: 371)

Name: NF20301_low_6
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20301_low_6
NF20301_low_6
[»] chr5 (15 HSPs)
chr5 (9-305)||(10218122-10218419)
chr5 (280-345)||(11049560-11049625)
chr5 (44-321)||(10603276-10603551)
chr5 (33-184)||(10664558-10664710)
chr5 (41-321)||(10599611-10599889)
chr5 (18-170)||(10661470-10661623)
chr5 (122-194)||(10764622-10764694)
chr5 (18-89)||(10653584-10653655)
chr5 (41-323)||(10610231-10610511)
chr5 (41-192)||(10748423-10748575)
chr5 (33-171)||(7191675-7191814)
chr5 (42-172)||(10557589-10557720)
chr5 (47-167)||(10549467-10549588)
chr5 (280-329)||(10579522-10579571)
chr5 (280-329)||(10590072-10590121)
[»] chr6 (4 HSPs)
chr6 (31-89)||(12956834-12956892)
chr6 (33-191)||(12905840-12905999)
chr6 (34-172)||(12930948-12931087)
chr6 (34-69)||(12947417-12947452)
[»] chr2 (2 HSPs)
chr2 (122-191)||(17924893-17924962)
chr2 (33-89)||(17924803-17924859)
[»] chr3 (1 HSPs)
chr3 (280-329)||(31468804-31468853)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 10218122 - 10218419
Alignment:
Q  9 gattatactcaacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttg 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218122 gattatacccaacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttg 10218221  T
Q  109 caacttagtataatt-gtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatctttt 207  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  10218222 caacttagtacaatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagcaatagtagatcattt 10218321  T
Q  208 agccatcctagagttggaacttgtccaacaaaatagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattgg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218322 agccatcctagagttggaacttgtccaacaaaatagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattgg 10218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 11049560 - 11049625
Alignment:
Q  280 gcatttgttatggaagtggggattggacctgagaattgatttcccccaatcgcacaaaattggaga 345  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11049560 gcatttgttatggaagtggggattggtcctgagaattgatttcccccaatcgcacaaaattggaga 11049625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 321
Target Start/End: Complemental strand, 10603551 - 10603276
Alignment:
Q  44 gataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaact 142  Q
    |||||||| |||||  ||||| ||||  | ||||||||||| |||||| ||| ||| ||   |||||||||| || | || ||||| |||||||||||||    
T  10603551 gataaatttcctatagaattttgcaaactacctccaaaattattattggttaaagatagtgattgcaacttactacagtttgtcaatgattttaaaaact 10603452  T
Q  143 ccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaaata 242  Q
    |||||||  ||||||| ||||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| |||||||||||||||||||||     
T  10603451 ccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaaatg 10603352  T
Q  243 gttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattggacctgagaattgattt 321  Q
    ||| | ||| |  ||||||| ||| |    ||| || ||||| |  || |||||||||||||||||| |||||||||||    
T  10603351 gttgtcaccaatttcaaataatgtca---aagaagaagcattcgaaattgaagtggggattggacctaagaattgattt 10603276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 184
Target Start/End: Original strand, 10664558 - 10664710
Alignment:
Q  33 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 131  Q
    |||||| | ||||||||||||||| |||||||| ||| ||| |||||||||| ||||||  |||||||| |||||| |   || || |||| ||||| ||    
T  10664558 taagttgattggataaattgcctacgaaatttgtcaatttggctccaaaattattattgcatatagaaatcacttgtagtctactacaattcgtcaagga 10664657  T
Q  132 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattcca 184  Q
     ||||| |||||||||||||| ||||| ||||||||||||  |||| ||||||    
T  10664658 ctttaagaactccaaatccttagttgagttgtcacctaaactgttgaattcca 10664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 321
Target Start/End: Complemental strand, 10599889 - 10599611
Alignment:
Q  41 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 139  Q
    ||||||||||| || ||  ||||| ||||  | ||||||||||| |||| | ||| ||| |||  |||||||||| || | || ||||| || || ||||    
T  10599889 gtggataaatttccaatagaattttgcaaactacctccaaaattattataggttaaagatagcgattgcaacttactacagtttgtcaatgacttcaaaa 10599790  T
Q  140 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 239  Q
    ||| ||||||| |||||||  |||||||||||  |||   |||||||||||||||    ||||||||||||   |||||| |||||||||||||||||||    
T  10599789 actgcaaatccattgttgagctgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaacaaa 10599690  T
Q  240 atagttttgaccgagatcaaatattgtaatgggagatgatgcatttgttatggaagtggggattggacctgagaattgattt 321  Q
    || ||| | |||||  ||||||| ||| |    ||| || |||||||  || ||||| ||||||||||||||||||| ||||    
T  10599689 atggttgtcaccgatttcaaataatgtca---aagaagaagcatttgaaattgaagtagggattggacctgagaatttattt 10599611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 10661470 - 10661623
Alignment:
Q  18 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagt 117  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| || |||||||  ||| ||  |||||||| ||||   |  |||||    
T  10661470 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacccccaaaatgattactggatatagaaatcactcttagtttagt 10661569  T
Q  118 -ataattgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaa 170  Q
     |   ||||||| | ||| ||||||||||||||||| |||||||||||||||||    
T  10661570 gaagtttgtcaaggttttcaaaaactccaaatccttagttgaattgtcacctaa 10661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 10764622 - 10764694
Alignment:
Q  122 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaa 194  Q
    |||||||| ||||||||||||| |||||| |||| |||||||||||||||| ||| | |||||||||||||||    
T  10764622 ttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaa 10764694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 10653584 - 10653655
Alignment:
Q  18 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 89  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| ||||||||||| ||||    
T  10653584 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacctccaaaattattat 10653655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 323
Target Start/End: Complemental strand, 10610511 - 10610231
Alignment:
Q  41 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 139  Q
    |||||||||||||| ||||||||||||||  | |||||||| || |||||   ||||||||||  ||  |  ||| || | || |||||| |||||||||    
T  10610511 gtggataaattgccaatgaaatttggcaaactacctccaaacttattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaa 10610412  T
Q  140 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcctagagttggaacttgtccaacaaa 239  Q
    |||| |||||  | |||||||||| ||| |||||||||||||||||| | ||| |    ||||||  || |    ||||| |||||||||||||||| ||    
T  10610411 actctaaatctatagttgaattgttaccgaaatagttgtattccaaactcagccagtaaagatctggtaacttctctagacttggaacttgtccaaccaa 10610312  T
Q  240 atagttttgaccgagatcaaata-ttgtaatgggagatgatgcatttgttatggaagtggggattggacctgagaattgatttcc 323  Q
    || ||||||||| | ||||| || |||||    | || || |||||||  ||||||   ||||||||||||||||||||||||||    
T  10610311 attgttttgacctaaatcaattatttgta----gggaagaagcatttgcaatggaaacagggattggacctgagaattgatttcc 10610231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 10748423 - 10748575
Alignment:
Q  41 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 139  Q
    ||||||||| |||| ||| ||||||||||  | |||||||| || |||||   |||||||| |||||  |  ||| || |||| |||||| | |||||||    
T  10748423 gtggataaactgccaatggaatttggcaaactacctccaaacttattattacatatagaaaccacttctagtttactacaatttgtcaaatactttaaaa 10748522  T
Q  140 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagc 192  Q
    |||| |||||  | |||||||||| ||| |||||||||| |||||||||||||    
T  10748523 actctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagc 10748575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 7191814 - 7191675
Alignment:
Q  33 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 131  Q
    |||||| |||||||||||| || ||| |||||||||| || ||||||||||| |||  |  |||||||| |||| | |  ||| || | || ||||| ||    
T  7191814 taagttgagtggataaattcccaatggaatttggcaaattacctccaaaattattaaaggatatagaaaacactagtagtttactacagtttgtcaagga 7191715  T
Q  132 ttttaaaaactccaaatcctttgttgaattgtcacctaaa 171  Q
    |||||||||||| |||||||| || ||||||| |||||||    
T  7191714 ttttaaaaactctaaatccttagtggaattgttacctaaa 7191675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 10557720 - 10557589
Alignment:
Q  42 tggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaa 140  Q
    ||||||||||||||   |||||||||||  | ||||||||||| |||| |  |||||||  ||||||||||||| || | || ||||| |||||||||||    
T  10557720 tggataaattgcctgccaaatttggcaaactacctccaaaattattatgggatatagaacacacttgcaacttactacagttagtcaatgattttaaaaa 10557621  T
Q  141 ctccaaatcctttgttgaattgtcacctaaat 172  Q
       ||||||||| |||||||| ||||| ||||    
T  10557620 aatcaaatccttagttgaattttcaccaaaat 10557589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 10549588 - 10549467
Alignment:
Q  47 aaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaactcca 145  Q
    ||||| ||||||||| |||||||  | ||||||||||| |||| |  ||||||||   ||||||| ||| || |||| ||||| | ||||||||| || |    
T  10549588 aaattacctatgaaacttggcaaactacctccaaaattattatgggatatagaaaatgcttgcaaattactacaatttgtcaatggttttaaaaattcta 10549489  T
Q  146 aatcctttgttgaattgtcacc 167  Q
    ||||||| ||||||||||||||    
T  10549488 aatccttagttgaattgtcacc 10549467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 10579571 - 10579522
Alignment:
Q  280 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 329  Q
    |||||||  |||||||| ||||||||||| |||||||||||||| |||||    
T  10579571 gcatttgcaatggaagttgggattggaccagagaattgatttcctccaat 10579522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 10590072 - 10590121
Alignment:
Q  280 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 329  Q
    |||||||  |||||||| ||||||||||| |||||||||||||| |||||    
T  10590072 gcatttgcaatggaagttgggattggaccagagaattgatttcctccaat 10590121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 12956892 - 12956834
Alignment:
Q  31 aataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 89  Q
    ||||||||||||||||||||| |||||| |||||||||| | |||||||||||| ||||    
T  12956892 aataagttcagtggataaattccctatggaatttggcaaatggcctccaaaattattat 12956834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 12905999 - 12905840
Alignment:
Q  33 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 131  Q
    ||||||||||||| || ||||||||| |||||||||| |  ||||||||||| |||   | ||| |||||||| |  |  ||| |  |||| |||||| |    
T  12905999 taagttcagtggaaaagttgcctatggaatttggcaaatgtcctccaaaattattagaatctattgaaagcacgtatagtttactgcaatttgtcaaata 12905900  T
Q  132 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 191  Q
    |||||||||||| |||||||| |||||| ||| |||||||| |||| || ||||| ||||    
T  12905899 ttttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttag 12905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 12931087 - 12930948
Alignment:
Q  34 aagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataa-ttgtcaaagat 132  Q
    ||||||||| ||||||||||||||| |||||||||| |  ||||||||||| ||||    ||| |||||||| |  |  ||| |  || |||||||| ||    
T  12931087 aagttcagtcgataaattgcctatggaatttggcaaatgacctccaaaattattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatat 12930988  T
Q  133 tttaaaaactccaaatcctttgttgaattgtcacctaaat 172  Q
    ||||||||||| |||||| | |||||||||| ||||||||    
T  12930987 tttaaaaactctaaatccatagttgaattgttacctaaat 12930948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 12947452 - 12947417
Alignment:
Q  34 aagttcagtggataaattgcctatgaaatttggcaa 69  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12947452 aagttcagtggataaattgcctatggaatttggcaa 12947417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 17924893 - 17924962
Alignment:
Q  122 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 191  Q
    |||||||| ||||||||||||| |||||| | |||||||| |||||||||| ||| | ||||||||||||    
T  17924893 ttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag 17924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 17924803 - 17924859
Alignment:
Q  33 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 89  Q
    ||||||||||||||||||| |||||| |||||||||| |  ||||||||||| ||||    
T  17924803 taagttcagtggataaattccctatggaatttggcaaatgacctccaaaattattat 17924859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 31468804 - 31468853
Alignment:
Q  280 gcatttgttatggaagtggggattggacctgagaattgatttcccccaat 329  Q
    ||||||| ||||||||| ||||||||||||||||||||||| || |||||    
T  31468804 gcatttgatatggaagttgggattggacctgagaattgattcccaccaat 31468853  T

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