View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20301_low_7 (Length: 354)
Name: NF20301_low_7
Description: NF20301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20301_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 7329665 - 7329991
Alignment:
| Q |
18 |
ccggcaagatacaagattttacta--gacactgcatctagtaggaaaagaaaagctaaaaacactacaggacctcaaagaaccaaaacacaacctttaag |
115 |
Q |
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| T |
7329665 |
ccggcaagatacaagattttactatagacactgcatctagtaggaaaagaaaagctaaaaacaccacaggacctcaaagaaccaaaacacaacctttaag |
7329764 |
T |
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| Q |
116 |
gccaacctagaaacaatatgtagctaacaccagtgcttttacaaaagtcgattttgaccaaccaacaactctaactaaaagcaaatagaaacacttgaca |
215 |
Q |
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| T |
7329765 |
gccaacctagaaacaatatgtagctaacaccagtgcttttacaaaagtcgattttgaccaaccaacaactctaactaaaagcaaatagaaacacttgaca |
7329864 |
T |
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| Q |
216 |
caaacgaatcttacaatgaaccataacagtagcaaaaactataaatgcaacactttaatctacatagaaaagcctcaagcgacaatccctacagtagaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7329865 |
caaacgaatcttacaatgaaccataacagtagcaaaaactataaatgcagcactttaatctacatagaaaagcctcaaacgacaatccctacagtagaaa |
7329964 |
T |
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| Q |
316 |
aaccgcgccttcccctgagaattccag |
342 |
Q |
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|||||||||||| |||||||||||||| |
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| T |
7329965 |
aaccgcgccttcacctgagaattccag |
7329991 |
T |
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