View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20302_high_2 (Length: 583)
Name: NF20302_high_2
Description: NF20302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20302_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 576
Target Start/End: Complemental strand, 44628260 - 44627707
Alignment:
| Q |
19 |
ccactgcatttgattccataacatgtccaatctaaaagaataaaaa-caattaccaaagtcttcaatatgatcttgtcaaggtcagatcagagcaccatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44628260 |
ccactgcatttgattccataacatgtccaatctaaaagaataaaaaacaattaccaaagtcttcaatatgatcttgtcaaggtcaga-----gcaccatc |
44628166 |
T |
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| Q |
118 |
ataactcgatcaattatttaattccaagaagagatcatcctacaagcaaaaatcatatcatatattatataaaccatagatgaaatagtaatttaaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628165 |
ataactcgatcaattatttaattccaagaagagatcatcctacaagcaaaaatcatatcatatattatataaaccatagatgaaatagtaatttaaaatt |
44628066 |
T |
|
| Q |
218 |
taataggaaacagaacaatgtaaaattttttacaacttcaaagtaaacatattcaatagttagtaactcgatcatttacattttaaagtttgattaataa |
317 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44628065 |
taataggaaacagaacaatgtacaaaattttacaacttcaaagtaaacatattcaatagttagtaactcaatcatttacattttaaagtttgattaataa |
44627966 |
T |
|
| Q |
318 |
actaaatccaacatagctacttagtaaacaacaaatacaatgacatgatgaattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaa |
417 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627965 |
actcaatccaacatagctacttagtaaacaacaaatacaatgacatgatgaattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaa |
44627866 |
T |
|
| Q |
418 |
caagttaaaaaaggcacttacaaagagtagtttttgaatcagggcattgcacgtgtagaagaggatcctctcttctggcgttccttctctccttgcttga |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
44627865 |
caagttaaaaaaggcacttacaaagagtagtttttgaatcagggcgttgcacgtgtagaagaggatcctctcttccggcgctccttctctccttgcttga |
44627766 |
T |
|
| Q |
518 |
aggacttcttgtttttctttagaagcttgaaaagatctttgataaccaagttcatctct |
576 |
Q |
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| T |
44627765 |
aggacttcttgtttttctttagaagcttgaaaagatctttgataaccaagttcatctct |
44627707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 42388546 - 42388592
Alignment:
| Q |
19 |
ccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
65 |
Q |
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| T |
42388546 |
ccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
42388592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 449 - 576
Target Start/End: Complemental strand, 26080955 - 26080828
Alignment:
| Q |
449 |
ttttgaatcagggcattgcacgtgtagaagaggatcctctcttctggcgttccttctctccttgcttgaaggacttcttgtttttctttagaagcttgaa |
548 |
Q |
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||||||||||| ||||| ||| ||||||||||||||| ||| | | |||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26080955 |
ttttgaatcagaacattgtacgcgtagaagaggatcctttctccctgtgttctttctctccttgcttgaaggacttcttgtttttctttagaagcttgga |
26080856 |
T |
|
| Q |
549 |
aagatctttgataaccaagttcatctct |
576 |
Q |
| |
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||| ||||| | ||||||||||| |||| |
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| T |
26080855 |
aaggtctttcaaaaccaagttcacctct |
26080828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 368 - 458
Target Start/End: Original strand, 2850786 - 2850876
Alignment:
| Q |
368 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
458 |
Q |
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| T |
2850786 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2850876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 368 - 458
Target Start/End: Original strand, 2902818 - 2902908
Alignment:
| Q |
368 |
aattttcatttcctcttcaaactcatgtatgtgaagtttcaggtgtagaacaagttaaaaaaggcacttacaaagagtagtttttgaatca |
458 |
Q |
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| T |
2902818 |
aattttcattttctcttcaagtgcctgtgtgtgaagtttcagctgtagaacaagttagaaaaaacacttacaaggagtactttttgaatca |
2902908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 26081588 - 26081537
Alignment:
| Q |
26 |
atttgattccataacatgtccaatctaaaagaataaaaa-caattaccaaag |
76 |
Q |
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|||||||||| ||||||||||||||||||||| ||||| |||||||||||| |
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| T |
26081588 |
atttgattccttaacatgtccaatctaaaagacgaaaaaccaattaccaaag |
26081537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 34597483 - 34597529
Alignment:
| Q |
19 |
ccactgcatttgattccataacatgtccaatctaaaagaataaaaac |
65 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
34597483 |
ccactgcatttgattccttaacatgtccaatctaaaagaagaaaaac |
34597529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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