View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20302_high_4 (Length: 476)

Name: NF20302_high_4
Description: NF20302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20302_high_4
NF20302_high_4
[»] chr6 (55 HSPs)
chr6 (18-476)||(29470844-29471302)
chr6 (74-413)||(29690024-29690363)
chr6 (21-411)||(28488347-28488743)
chr6 (21-411)||(29800759-29801155)
chr6 (33-390)||(29768029-29768386)
chr6 (65-420)||(29663577-29663932)
chr6 (21-396)||(29756501-29756876)
chr6 (21-394)||(29719218-29719591)
chr6 (18-166)||(29801151-29801299)
chr6 (21-166)||(29712757-29712902)
chr6 (24-160)||(29719734-29719870)
chr6 (26-156)||(29720866-29720996)
chr6 (74-182)||(29768585-29768693)
chr6 (18-166)||(28488739-28488889)
chr6 (56-182)||(29690462-29690588)
chr6 (26-160)||(29720721-29720855)
chr6 (18-166)||(29672039-29672187)
chr6 (74-182)||(29768378-29768486)
chr6 (26-160)||(29719875-29720009)
chr6 (26-160)||(29720157-29720291)
chr6 (18-128)||(29690582-29690692)
chr6 (18-128)||(29690789-29690899)
chr6 (21-166)||(29712330-29712475)
chr6 (21-166)||(29712471-29712616)
chr6 (26-166)||(29719587-29719727)
chr6 (24-160)||(29720580-29720716)
chr6 (21-136)||(29671928-29672043)
chr6 (18-149)||(29672338-29672469)
chr6 (33-128)||(29768705-29768800)
chr6 (72-166)||(29470757-29470851)
chr6 (74-164)||(29672464-29672554)
chr6 (18-128)||(29690996-29691106)
chr6 (26-160)||(29720439-29720573)
chr6 (58-166)||(29690685-29690793)
chr6 (65-157)||(29705015-29705107)
chr6 (60-160)||(29720298-29720398)
chr6 (56-163)||(29691102-29691209)
chr6 (59-166)||(29712612-29712719)
chr6 (33-128)||(29768498-29768593)
chr6 (18-160)||(29757019-29757161)
chr6 (116-182)||(29768792-29768858)
chr6 (58-163)||(29690895-29691000)
chr6 (17-162)||(29757158-29757303)
chr6 (66-166)||(29663980-29664080)
chr6 (60-156)||(29721007-29721103)
chr6 (72-162)||(29757299-29757389)
chr6 (69-182)||(29470613-29470726)
chr6 (59-160)||(29720016-29720117)
chr6 (60-160)||(29721144-29721244)
chr6 (72-160)||(29721285-29721373)
chr6 (49-128)||(29690375-29690454)
chr6 (69-182)||(29664105-29664218)
chr6 (72-166)||(28488882-28488976)
chr6 (60-166)||(29756872-29756978)
chr6 (72-166)||(29801292-29801386)
[»] chr3 (9 HSPs)
chr3 (18-396)||(617758-618136)
chr3 (21-166)||(617620-617765)
chr3 (18-160)||(617194-617336)
chr3 (21-166)||(617056-617201)
chr3 (21-157)||(617479-617615)
chr3 (24-166)||(617341-617483)
chr3 (21-149)||(616915-617043)
chr3 (21-128)||(616774-616881)
chr3 (72-166)||(616684-616778)
[»] scaffold0012 (8 HSPs)
scaffold0012 (21-396)||(210066-210441)
scaffold0012 (18-203)||(236561-236746)
scaffold0012 (23-166)||(236739-236882)
scaffold0012 (18-160)||(236886-237028)
scaffold0012 (276-394)||(236354-236472)
scaffold0012 (72-166)||(237021-237115)
scaffold0012 (72-158)||(210445-210531)
scaffold0012 (118-182)||(200045-200109)
[»] chr8 (1 HSPs)
chr8 (79-366)||(12591378-12591665)
[»] scaffold0007 (2 HSPs)
scaffold0007 (18-263)||(74111-74351)
scaffold0007 (351-435)||(74364-74448)
[»] chr1 (6 HSPs)
chr1 (59-180)||(5920104-5920225)
chr1 (17-182)||(5920666-5920831)
chr1 (72-190)||(5920940-5921058)
chr1 (256-419)||(5919160-5919323)
chr1 (79-193)||(5919950-5920064)
chr1 (64-164)||(5919838-5919938)


Alignment Details
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 55)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 29470844 - 29471302
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29470844 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctctcaggttggattcattagaaaagcttgacc 29470943  T
Q  118 tttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgag 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29470944 tttcacattgttatagtctcgagagttttccaactgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgag 29471043  T
Q  218 tatcccatcgctcaggttgacctcattggaacggttcaatctttcacattgtcagagcctagagagatttccaaaaatattgggagagatgaataatata 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29471044 tatcccatcgctcaggttgacctcattggaacggttcaatctttcacattgtctgagcctagagagatttccaaaaatattgggagagatgaataatata 29471143  T
Q  318 acagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttg 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29471144 acagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatcaatgtaactgtggagttg 29471243  T
Q  418 tttatttatcgaatagagctgctgtgatgtcaaaactggctgaatctaccatccaggct 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29471244 tttatttatcgaatagagctgctgtgatgtcaaaactggctgaatttaccatccaggct 29471302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 74 - 413
Target Start/End: Complemental strand, 29690363 - 29690024
Alignment:
Q  74 gagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggat 173  Q
    |||||||||| |||| | |||||||||| ||||||  ||| |||||||| |||||||||  |||||||| ||||||| ||| ||||||||||||||||||    
T  29690363 gagtattccatctctcaagttggattcactagaaacacttaacctttcagattgttataagctcgagagctttccaagtgttgtggatgggttgttggat 29690264  T
Q  174 aaacttaaattcttgagtatggaacattgcgtcaagcttacgagtatcccatcgctcaggttgacctcattggaacggttcaatctttcacattgtcaga 273  Q
    ||| | |||||||||| ||| ||| ||||| ||| ||||| || |||||||  |||||| ||||| || |||||||  ||||||||||||  |||| | |    
T  29690263 aaattgaaattcttgaatattgaaaattgcatcatgcttaggaatatcccacggctcagtttgacttcgttggaacaattcaatctttcatgttgttata 29690164  T
Q  274 gcctagagagatttccaaaaatattgggagagatgaataatataacagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaa 373  Q
    | || ||||| |||||| ||||||||||||||||||  |||||| ||  | | ||||||||| | |||| |||| ||||||| |||||||||||||||||    
T  29690163 ggcttgagagttttccagaaatattgggagagatgagaaatataccaagactccacttggatgaaactcccataaaagaattaccgtttccatttcaaaa 29690064  T
Q  374 tcttactccgcctcaaacattatatccatgtaactgtgga 413  Q
    |||||| | ||| |||||||  ||||||||||||||||||    
T  29690063 tcttacacagccccaaacatattatccatgtaactgtgga 29690024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 28488743 - 28488347
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| ||| ||||||  |  ||||| ||| |||||||||||||||||||| | |||||||||| ||||||| ||||||||||    
T  28488743 gggtttcttggaaaacttaaaacccttcttgttggaagttgtcacaaactcaggagtattccacctctcaagttggattcactagaaaaacttgaccttt 28488644  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgagtat 220  Q
    || |||||| ||||||||||||||||| |  ||||| |||||||||| |||||||||| |||||||||| ||| |||  ||| |||| ||||| || |||    
T  28488643 catattgttgtagtctcgagagttttctatctgtggaggatgggttgctggataaactgaaattcttgaatattgaatgttgtgtcatgcttaggaatat 28488544  T
Q  221 cccatcgctcaggttgacctcattggaacggttcaatctttcacattgtcagag------cctagagagatttccaaaaatattgggagagatgaataat 314  Q
    ||||| ||||| |||||| || |||||||  ||||||||||||  |||| | ||       || ||||| |||||| | ||||||||||||||||  |||    
T  28488543 cccatggctcaagttgacttctttggaacatttcaatctttcatgttgttatagtcttgatcttgagagttttccagatatattgggagagatgagaaat 28488444  T
Q  315 ataacagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtg 411  Q
    ||| ||| | | |  |||||| | |||  |||| |||| ||||| |||||||||||||||||||| | || |||||||||  |||||||||||||||    
T  28488443 ataccaggactcctattggatgaaactaccatagaagagttgccatttccatttcaaaatcttacccagcttcaaacatttcatccatgtaactgtg 28488347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 29801155 - 29800759
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| ||| ||||||  |  ||||| ||| |||||||||||||||||||| | |||||||||| ||||||| ||||||||||    
T  29801155 gggtttcttggaaaacttaaaacccttcttgttggaagttgtcacaaactcaggagtattccacctctcaagttggattcactagaaaaacttgaccttt 29801056  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgagtat 220  Q
    || |||||| ||||||||||||||||| |  ||||| |||||||||| |||||||||| |||||||||| ||| |||  ||| |||| ||||| || |||    
T  29801055 catattgttgtagtctcgagagttttctatctgtggaggatgggttgctggataaactgaaattcttgaatattgaatgttgtgtcatgcttaggaatat 29800956  T
Q  221 cccatcgctcaggttgacctcattggaacggttcaatctttcacattgtcagag------cctagagagatttccaaaaatattgggagagatgaataat 314  Q
    ||||| ||||| |||||| || |||||||  ||||||||||||  |||| | ||       || ||||| |||||| | ||||||||||||||||  |||    
T  29800955 cccatggctcaagttgacttctttggaacatttcaatctttcatgttgttatagtcttgatcttgagagttttccagatatattgggagagatgagaaat 29800856  T
Q  315 ataacagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtg 411  Q
    ||| ||| | | |  |||||| | |||  |||| |||| ||||| |||||||||||||||||||| | || |||||||||  |||||||||||||||    
T  29800855 ataccaggactcctattggatgaaactaccatagaagagttgccatttccatttcaaaatcttacccagcttcaaacatttcatccatgtaactgtg 29800759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 33 - 390
Target Start/End: Complemental strand, 29768386 - 29768029
Alignment:
Q  33 aaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttata 132  Q
    |||||||||| |||  |||||||| |||||| ||||||||||| ||||||| |||| | |||||||||| | ||||| |||||||||||| |||||||||    
T  29768386 aaacttaaaaccctgtttgttaaaaattgtcacaatctcaggaatattccagctctcaagttggattcacttgaaaaacttgacctttcagattgttata 29768287  T
Q  133 gtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgagtatcccatcgctcag 232  Q
      |||||||| ||||||| ||||||||||||||||||||||||| | |||||||||| ||| | | | ||| ||| ||||| || |||||||  ||||||    
T  29768286 agctcgagagctttccaagtgtggtggatgggttgttggataaattgaaattcttgaatattgtaaactgcatcatgcttaggaatatcccacggctcag 29768187  T
Q  233 gttgacctcattggaacggttcaatctttcacattgtcagagcctagagagatttccaaaaatattgggagagatgaataatataacagaaattcacttg 332  Q
      |||| || |||||||  ||||||||||||  |||| | || || ||||| |||||| ||||||||||||||||||  |||||| ||  | | ||||||    
T  29768186 cctgacttcgttggaacatttcaatctttcatgttgttataggcttgagagttttccagaaatattgggagagatgagaaatataccaagactccacttg 29768087  T
Q  333 gataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaa 390  Q
    ||| | |||| |||| ||||||| || |||| |||||||| |||||||| ||||||||    
T  29768086 gatgaaactcccataaaagaatttccatttcaatttcaaactcttactcagcctcaaa 29768029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 65 - 420
Target Start/End: Complemental strand, 29663932 - 29663577
Alignment:
Q  65 caatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatggg 164  Q
    ||||||||  |||||||||||||| | |||||||||  ||||| | |||||||||||| ||||||||| ||| ||  | ||||||  ||| |||||||||    
T  29663932 caatctcataagtattccacctctcaagttggattcgctagaagaacttgacctttcatattgttataatcttgatggctttccagatgttgtggatggg 29663833  T
Q  165 ttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgagtatcccatcgctcag---gttgacctcattggaacggttcaatcttt 261  Q
    ||||||||||||||| |||||||||||||  ||||||| |||| | ||| |||||| ||| |||||||   |||||| || ||| ||  |||  ||||||    
T  29663832 ttgttggataaacttgaattcttgagtattaaacattgtgtcatgattaggagtattccaccgctcagctggttgacttcgttgaaattgtttgatcttt 29663733  T
Q  262 cacattgtcagagcctagagagatttccaaaaatattgggagagatgaataatataacagaaattcacttggataatactctcatacaagaattgccgtt 361  Q
    || ||||||  || || ||||| |||||| ||||||||||||||||||  ||| ||||| |  || |||||||  |||||| |||| |||||||||||||    
T  29663732 catattgtctaagtctggagagttttccagaaatattgggagagatgagaaatgtaacaaaccttaacttggaatatactcccataaaagaattgccgtt 29663633  T
Q  362 tccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgttt 420  Q
    |||||||||||||||||||| |||| |||   |||||||||||||||||||| ||||||    
T  29663632 tccatttcaaaatcttactctgcctaaaa---tatatccatgtaactgtggatttgttt 29663577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 396
Target Start/End: Complemental strand, 29756876 - 29756501
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| ||| ||||||| | | |||  |||||||| |||||| |||||||| | | ||||||| ||||| || ||||||||||    
T  29756876 gggtttcttggaaaacttaaaaccctgcttgttagaaagtgttacaatctcaagagtatcccacctctcaagctggattctttagagaaacttgaccttt 29756777  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgagtat 220  Q
    ||  ||| | |||||| ||||||||||||  ||||||||||||||||||||||||||||||||| |||| ||| |||  |||| ||| ||||| || |||    
T  29756776 catgttgctgtagtcttgagagttttccatgtgtggtggatgggttgttggataaacttaaatttttgaatattgaatgttgcatcatgcttaggaatat 29756677  T
Q  221 cccatcgctcaggttgacctcattggaacggttcaatctttcacattgtcagagcctagagagatttccaaaaatattgggagagatgaataatataaca 320  Q
    ||||  |||||||||||| |||||||||   ||||||||||||  |||| | || || ||||| |||||| |||||||||| || ||||  |||||| ||    
T  29756676 cccacggctcaggttgacttcattggaatatttcaatctttcatgttgttatagtctcgagagttttccagaaatattgggggaaatgagaaatatacca 29756577  T
Q  321 gaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattat 396  Q
    | | | |    |||| |||||| |||| ||||| | || ||||| ||| ||| |||||||| |||||| |||||||    
T  29756576 ggactccttaaggatgatactcccataaaagaaattccatttccctttaaaactcttactcagcctcagacattat 29756501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 394
Target Start/End: Complemental strand, 29719591 - 29719218
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| | | ||||||||| |||||| ||||||||| |||||||||||||||| ||||||||   || || | ||||||||||    
T  29719591 gggtttcttggaaaacttaaaaccatgcttgttaaaaattgtcacaatctcagaagtattccacctcttaagttggatttgctacaagaacttgaccttt 29719492  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgagtat 220  Q
    || |||||| ||  |||||||||||| ||| ||||  ||||| |||||||||||||||||||||| ||| ||| |||   ||| ||| ||||| ||||||    
T  29719491 caaattgttttatgctcgagagtttttcaagtgtgcgggatgagttgttggataaacttaaattcgtgaatattgaattctgcatcatgcttaggagtat 29719392  T
Q  221 cccatcgctcaggttgacctcattggaacggttcaatctttcacattgtcagagcctagagagatttccaaaaatattgggagagatgaataatataaca 320  Q
    ||||  ||||||||| || || ||| ||   ||||||||||||  |||| | || || ||||| |||||| ||||||||||||||||||  |||||| ||    
T  29719391 cccacagctcaggttaacttctttgaaatatttcaatctttcatgttgttatagtcttgagagttttccagaaatattgggagagatgagaaatatacca 29719292  T
Q  321 gaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacatt 394  Q
    | | | | ||||||| | |||| ||    |||||   |||||| |||||| |||||||||| ||||| ||||||    
T  29719291 ggactcctcttggatgacactcccagtatagaatcatcgtttcaatttcacaatcttactcagcctccaacatt 29719218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 29801299 - 29801151
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||||||||| |||||||| |||| | | ||| ||||| ||||||  ||||||| ||||||||||||||| | |||||||||| ||||||  |||||||    
T  29801299 gatgggtttctcggaaaactaaaaaccttgcttcttaaaaattgtcataatctcaagagtattccacctctcatgttggattcactagaaacacttgacc 29801200  T
Q  118 tttcacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    ||||| ||||||||| |||||||||||||||| ||||||| || |||||    
T  29801199 tttcaaattgttataatctcgagagttttccacttgtggtagacgggtt 29801151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 29712902 - 29712757
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||| ||||||||||||||| |||   |||||    |||||||||||||||||||||||||||||| | |||||||||| ||||||  |||||| |||    
T  29712902 gggttttttggaaaacttaaaaccctgaatgttagtagttgtcgcaatctcaggagtattccacctctcaagttggattcactagaaactcttgactttt 29712803  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    |||||||| |  |||| ||||||||||||||||||||||| |||||    
T  29712802 cacattgtcacggtcttgagagttttccaattgtggtggacgggtt 29712757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 29719870 - 29719734
Alignment:
Q  24 tttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcac 123  Q
    ||||||| ||||||||||| |||   |||||||| ||||||||||||||| |||||||||||||||| |||||||||| | ||||  || || ||||||     
T  29719870 tttcttgcaaaacttaaaaccctgaatgttaaatgttgtcgcaatctcagaagtattccacctcttaagttggattcactggaaacactagaactttcag 29719771  T
Q  124 attgttatagtctcgagagttttccaattgtggtgga 160  Q
    ||||| ||||||| |||||||||||| ||||||||||    
T  29719770 attgtcatagtcttgagagttttccacttgtggtgga 29719734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 29720996 - 29720866
Alignment:
Q  26 tcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacat 125  Q
    ||||||||||||||||| | | ||||||||| |||||| |||||||| ||||||||||||||| | |||||||||| ||||||  || || |||||| ||    
T  29720996 tcttggaaaacttaaaaccatgcttgttaaaaattgtcacaatctcaagagtattccacctctcaagttggattcactagaaacactagaactttcagat 29720897  T
Q  126 tgttatagtctcgagagttttccaattgtgg 156  Q
    ||| ||||||| |||||||||||| ||||||    
T  29720896 tgtcatagtcttgagagttttccacttgtgg 29720866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 29768693 - 29768585
Alignment:
Q  74 gagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggat 173  Q
    ||||||| ||||||| | |||||||||| ||||||| |||| ||||||| |||||||||  |||||||| |||||||  |||||||||||||||||||||    
T  29768693 gagtatttcacctctcaagttggattcactagaaaaacttgtcctttcaaattgttataagctcgagagctttccaagcgtggtggatgggttgttggat 29768594  T
Q  174 aaacttaaa 182  Q
    |||||||||    
T  29768593 aaacttaaa 29768585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 28488889 - 28488739
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatccta-cttgttaaata-ttgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttga 115  Q
    ||||||||||| |||||||| |||| |||  ||| ||||| | |||||  ||||||| ||||||||||||||| | |||||||||| ||||||  |||||    
T  28488889 gatgggtttctcggaaaactaaaaaaccttgcttcttaaaaaattgtcataatctcaagagtattccacctctcatgttggattcactagaaacacttga 28488790  T
Q  116 cctttcacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    ||||||| ||||||||| |||||||||||||||| ||||||| || |||||    
T  28488789 cctttcaaattgttataatctcgagagttttccacttgtggtagacgggtt 28488739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 29690588 - 29690462
Alignment:
Q  56 atattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtg 155  Q
    ||||||||||||||||  ||||||| ||||||| | |||||||||| ||||||| |||| | ||||| |||||||||  || ||||| ||||||   |||    
T  29690588 atattgtcgcaatctcgtgagtatttcacctctcaagttggattcactagaaaaacttgtcatttcaaattgttataagcttgagagctttccaggcgtg 29690489  T
Q  156 gtggatgggttgttggataaacttaaa 182  Q
    |||||||||||||||||||||||||||    
T  29690488 gtggatgggttgttggataaacttaaa 29690462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 29720855 - 29720721
Alignment:
Q  26 tcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacat 125  Q
    ||||||||||||||||| | | ||||||||| |||||| |||||||| ||||||||||||||| | |||||||||| ||||||  || || ||||||  |    
T  29720855 tcttggaaaacttaaaaccatgcttgttaaaaattgtcacaatctcaagagtattccacctctcaagttggattcactagaaacactagaactttcatgt 29720756  T
Q  126 tgttatagtctcgagagttttccaattgtggtgga 160  Q
    ||| ||| ||| |||||||||||| ||||||||||    
T  29720755 tgtgatactcttgagagttttccacttgtggtgga 29720721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 29672187 - 29672039
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||||||||||||||||||||||| |||   || ||||  |||||||||| | |||||||||||| |||| | |||||||| | ||||||  |||||||    
T  29672187 gatgggtttcttggaaaacttaaaaccctgagtgctaaaagttgtcgcaatttaaggagtattccatctctcaagttggatttactagaaacacttgacc 29672088  T
Q  118 tttcacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    ||||| |||||  |||||| |||||| ||||| |||||||||| |||||    
T  29672087 tttcaaattgtgttagtcttgagagtcttccacttgtggtggacgggtt 29672039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 29768486 - 29768378
Alignment:
Q  74 gagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggat 173  Q
    ||||||| ||||||| | |||||||||| ||||||| |||| ||||||| |||||||||  |||||||| |||||||  |||||||||||||||||| ||    
T  29768486 gagtatttcacctctcaagttggattcactagaaaaacttgtcctttcaaattgttataagctcgagagctttccaagcgtggtggatgggttgttgaat 29768387  T
Q  174 aaacttaaa 182  Q
    |||||||||    
T  29768386 aaacttaaa 29768378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 29720009 - 29719875
Alignment:
Q  26 tcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacat 125  Q
    ||||||||||||||||| | | ||||||||| |||||| || ||||| ||||||||||||||| | |||||||||| ||||||  || || ||||||  |    
T  29720009 tcttggaaaacttaaaaccatgcttgttaaaaattgtcacagtctcaagagtattccacctctcaagttggattcactagaaacactagaactttcatgt 29719910  T
Q  126 tgttatagtctcgagagttttccaattgtggtgga 160  Q
    ||| ||| ||| |||||||||||| ||||||||||    
T  29719909 tgtgatactcttgagagttttccacttgtggtgga 29719875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 29720291 - 29720157
Alignment:
Q  26 tcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacat 125  Q
    ||||||||||||||||| | | ||||||||| |||||| ||||||||  |||||||||||||| | |||||||||| ||||||  || || ||||||  |    
T  29720291 tcttggaaaacttaaaaccatgcttgttaaaaattgtcacaatctcaaaagtattccacctctcaagttggattcactagaaacactagaactttcaggt 29720192  T
Q  126 tgttatagtctcgagagttttccaattgtggtgga 160  Q
    ||| ||| ||| |||||||||||| ||||||||||    
T  29720191 tgtgatactcttgagagttttccacttgtggtgga 29720157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 29690692 - 29690582
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||||||||||||||||||||||| |||| |||| |||  ||||| ||||||||||||||||||| |||| | |||||||||| | ||||| ||| |||    
T  29690692 gatgggtttcttggaaaacttaaaaccctatttgtgaaaagttgtcacaatctcaggagtattccagctctcaagttggattcacttgaaaaactttacc 29690593  T
Q  118 tttcacattgt 128  Q
    | ||| |||||    
T  29690592 tatcatattgt 29690582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 29690899 - 29690789
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||| ||||||||||||||||||| |||  |||||  | |||||| |||||| |||||||||||| |||| |||||||||||| | ||||| |||||||    
T  29690899 gatggatttcttggaaaacttaaaaccctgtttgttcgaaattgtcacaatcttaggagtattccaactctcaggttggattcacttgaaaaacttgacc 29690800  T
Q  118 tttcacattgt 128  Q
    | |||||||||    
T  29690799 tatcacattgt 29690789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 29712475 - 29712330
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| | | |||||| ||  ||||| ||||||||| |||||||||||||| | ||||||||   ||||||  ||| ||||||    
T  29712475 gggtttcttggaaaacttaaaaccttgcttgttgaaggttgtcacaatctcagaagtattccacctctcaagttggatttgctagaaacacttaaccttt 29712376  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    ||  |||||||| |||  |||||||| || ||||||||| ||||||    
T  29712375 catgttgttataatcttaagagtttttcacttgtggtgggtgggtt 29712330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 29712616 - 29712471
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| |||   ||||||   ||||  |||| | |||||| | |||||||| | |||||||||| ||||||   |||||||      
T  29712616 gggtttcttggaaaacttaaaaccctgaatgttaatagttgtgacaatttgaggagtgtcccacctctcaagttggattcactagaaacatttgacctaa 29712517  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||    
T  29712516 cacattgtcatagtcttgagagttttccaattgtggtggacgggtt 29712471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 29719727 - 29719587
Alignment:
Q  26 tcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacat 125  Q
    ||||||||||||||||| | | ||||||| | | |||  || ||||||||||||||||||||| | |||||||||| ||||||  ||||| ||||||  |    
T  29719727 tcttggaaaacttaaaaccatgcttgttacaaactgtttcagtctcaggagtattccacctctcaagttggattcactagaaacacttgatctttcatgt 29719628  T
Q  126 tgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    |||| |||||| |||| ||||||| ||||||| || |||||    
T  29719627 tgttttagtcttgagaattttccacttgtggttgacgggtt 29719587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 29720716 - 29720580
Alignment:
Q  24 tttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcac 123  Q
    ||||||| ||||||||||| |||   |||||||| ||||||||||||||| |||||||||||||| | |||||||||  | ||||  ||  | ||||||     
T  29720716 tttcttgcaaaacttaaaaccctgaatgttaaatgttgtcgcaatctcagaagtattccacctctcaagttggattccctggaaacactaaaactttcag 29720617  T
Q  124 attgttatagtctcgagagttttccaattgtggtgga 160  Q
    ||||| || |||| |||||||||||| ||||||||||    
T  29720616 attgtcattgtcttgagagttttccacttgtggtgga 29720580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 29672043 - 29671928
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| ||||||||||| | | |||| |||||| | ||||||||||||||| | ||  ||| || ||||||  ||||||||||    
T  29672043 gggtttcttggaaaacttaaaaccctacttgttacaaactgtcacaatcttaagagtattccacctctgaagtgtgatgcactagaaacacttgaccttt 29671944  T
Q  121 cacattgttatagtct 136  Q
    ||  ||||||||||||    
T  29671943 catgttgttatagtct 29671928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 29672469 - 29672338
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    |||||| ||||||||||| ||||||  ||   |||| ||  ||||| ||||||||||||||||||||| || | ||||||||| |||||||| ||||||     
T  29672469 gatgggattcttggaaaaattaaaactctgaatgttgaaagttgtcacaatctcaggagtattccaccactcaagttggattcgttagaaaaacttgaca 29672370  T
Q  118 tttcacattgttatagtctcgagagttttcca 149  Q
    ||||| |||||  |||||| ||||||||||||    
T  29672369 tttcatattgtggtagtcttgagagttttcca 29672338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 29768800 - 29768705
Alignment:
Q  33 aaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgt 128  Q
    |||||||||| |||  |||||||| |||||| ||||||||||||||||||| |||| | |||||||||| | ||||| |||||||| |||||||||    
T  29768800 aaacttaaaaccctgtttgttaaaaattgtcacaatctcaggagtattccagctctcaagttggattcacttgaaaaacttgacctatcacattgt 29768705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 29470757 - 29470851
Alignment:
Q  72 aggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    |||||||||||| |||||| ||||  ||| |||||| | || || |||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  29470757 aggagtattccaactcttaagttgacttcgttagaagaactcgatctttcaaattgttttagtctcgagagttttccacttgtggtggatgggtt 29470851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 29672554 - 29672464
Alignment:
Q  74 gagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatggg 164  Q
    ||||||||||||||||| |||||||||| ||||||   | |||||||||  ||||| | ||||||||||||||||| ||||||||||||||    
T  29672554 gagtattccacctcttaagttggattcactagaaacaatggacctttcatgttgttttcgtctcgagagttttccacttgtggtggatggg 29672464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 29691106 - 29690996
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||| ||||||||||||||||||| |||  |||||  | |||||| |||||| |||||||||||| |||| | |||||||||| | ||||| |||||||    
T  29691106 gatggatttcttggaaaacttaaaaccctgtttgttcgaaattgtcacaatcttaggagtattccaactctcaagttggattcacttgaaaaacttgacc 29691007  T
Q  118 tttcacattgt 128  Q
    | |||||||||    
T  29691006 tatcacattgt 29690996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 29720573 - 29720439
Alignment:
Q  26 tcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacat 125  Q
    ||||||||||||||||| | | ||||||| | | ||||||| ||||| ||||||| ||||||| | |||||||||| ||||||  ||  | ||||||  |    
T  29720573 tcttggaaaacttaaaaccatgcttgttacaaactgtcgcagtctcatgagtattacacctctcaagttggattcactagaaacactaaaactttcattt 29720474  T
Q  126 tgttatagtctcgagagttttccaattgtggtgga 160  Q
    ||| ||||||| |||||||||||| ||||||||||    
T  29720473 tgtcatagtcttgagagttttccacttgtggtgga 29720439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 29690793 - 29690685
Alignment:
Q  58 attgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggt 157  Q
    ||||||||||||||  || |||   |||||| | |||||||||| ||||||| ||| ||||||||  ||||||||  |||||||||||||||| ||||||    
T  29690793 attgtcgcaatctcgtgaatatcttacctctcaagttggattcactagaaaaactttacctttcaagttgttataagctcgagagttttccaaatgtggt 29690694  T
Q  158 ggatgggtt 166  Q
    |||||||||    
T  29690693 ggatgggtt 29690685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 29705107 - 29705015
Alignment:
Q  65 caatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggt 157  Q
    |||||| ||||||||||| ||||| | |||||||||| ||||||  ||||| ||||||  |||||||||||| |||||||||||| |||||||    
T  29705107 caatctaaggagtattccccctctcaagttggattcactagaaacacttgaactttcatgttgttatagtcttgagagttttccacttgtggt 29705015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 29720398 - 29720298
Alignment:
Q  60 tgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtgg 159  Q
    ||||||| |||||| ||| |||||||||| | |||||||||| ||||||  || || |||||| ||||| ||||||| |||||||||||| |||||||||    
T  29720398 tgtcgcagtctcagaagttttccacctctcaagttggattcactagaaacactagaactttcagattgtcatagtcttgagagttttccacttgtggtgg 29720299  T
Q  160 a 160  Q
    |    
T  29720298 a 29720298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 29691209 - 29691102
Alignment:
Q  56 atattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtg 155  Q
    |||||||| |||||||  ||||||  ||||||| | |||||||||| ||||||| |||| ||||||| |||||||||  |||||||| |||||||  |||    
T  29691209 atattgtcccaatctcgtgagtatatcacctctcaagttggattcactagaaaaacttgtcctttcaaattgttataagctcgagagctttccaagcgtg 29691110  T
Q  156 gtggatgg 163  Q
    ||||||||    
T  29691109 gtggatgg 29691102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 29712719 - 29712612
Alignment:
Q  59 ttgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtg 158  Q
    |||||| ||||||||||||||||||||||| | |||||||| | | || |   ||||||||||| ||||| ||||||| |||| ||||||||||||| ||    
T  29712719 ttgtcggaatctcaggagtattccacctctcaagttggatttactggagacatttgacctttcatattgtcatagtcttgagaattttccaattgtgatg 29712620  T
Q  159 gatgggtt 166  Q
    || |||||    
T  29712619 gacgggtt 29712612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 29768593 - 29768498
Alignment:
Q  33 aaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgt 128  Q
    |||||||||| |||  |||||||| |||||| ||||||||||||||||||| |||| | |||||||||| | ||||| |||||||| | |||||||    
T  29768593 aaacttaaaaccctgtttgttaaaaattgtcacaatctcaggagtattccagctctcaagttggattcacttgaaaaacttgacctattacattgt 29768498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 29757161 - 29757019
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    |||| |||||||||||||||||||| |||   |||| ||  ||||| |||||||| |||||||| |||||| | |||||||||  ||  | | ||| |||    
T  29757161 gatgcgtttcttggaaaacttaaaaccctgaatgttgaaagttgtcacaatctcaagagtattcaacctctcaagttggattcgctaatatatcttaacc 29757062  T
Q  118 tttcacattgttatagtctcgagagttttccaattgtggtgga 160  Q
    ||||||||||||||| ||| |||| |||||||  |||||||||    
T  29757061 tttcacattgttataatcttgagaattttccatctgtggtgga 29757019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 29768858 - 29768792
Alignment:
Q  116 cctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaa 182  Q
    ||||||| |||||||||  |||||||| |||||||  ||||||||||||||||||||||||||||||    
T  29768858 cctttcaaattgttataagctcgagagctttccaagcgtggtggatgggttgttggataaacttaaa 29768792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 29691000 - 29690895
Alignment:
Q  58 attgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggt 157  Q
    ||||||||||||||  ||||||| ||||||| | |||||||||| ||||||  |||| ||| ||| |||||||||  |||||||| |||||||  |||||    
T  29691000 attgtcgcaatctcgtgagtatttcacctctcaagttggattcactagaaacacttggcctatcaaattgttataagctcgagagctttccaagcgtggt 29690901  T
Q  158 ggatgg 163  Q
    ||||||    
T  29690900 ggatgg 29690895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 29757303 - 29757158
Alignment:
Q  17 agatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgac 116  Q
    ||||| |||||||||||||||||||| | |   |||||||  |||  |||| || | ||||||||||||||| | |||| ||||  ||||||  ||||||    
T  29757303 agatgcgtttcttggaaaacttaaaaccttgaatgttaaaggttgctgcaaactaacgagtattccacctctcaagttgaattctctagaaacacttgac 29757204  T
Q  117 ctttcacattgttatagtctcgagagttttccaattgtggtggatg 162  Q
    ||||| || ||||||||||| |||| ||| ||| ||||||||||||    
T  29757203 ctttcgcaatgttatagtcttgagaatttcccacttgtggtggatg 29757158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 29664080 - 29663980
Alignment:
Q  66 aatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggt 165  Q
    ||||| ||||||||||||||||||| ||||  ||| ||||||||  | || ||||| || |||| ||||||||||| ||||||| ||||| |||||||||    
T  29664080 aatctaaggagtattccacctcttaagttgacttctttagaaaaattcgatctttcgcaatgttttagtctcgagaattttccacttgtgttggatgggt 29663981  T
Q  166 t 166  Q
    |    
T  29663980 t 29663980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 29721103 - 29721007
Alignment:
Q  60 tgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtgg 156  Q
    ||||||| |||||||||| |||| ||||| | |||||||||| ||||||  || || |||||| ||||| ||||||| |||||||||||| ||||||    
T  29721103 tgtcgcagtctcaggagttttccgcctctcaagttggattcactagaaacactagaactttcaaattgtcatagtcttgagagttttccacttgtgg 29721007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 29757389 - 29757299
Alignment:
Q  72 aggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatg 162  Q
    ||||||||||||||||| | |||| ||||  ||||||  ||||||||||| || ||||||||||| |||| ||||||| ||||||| ||||    
T  29757389 aggagtattccacctctcaagttgaattctctagaaacacttgacctttcgcagtgttatagtcttgagaattttccacttgtggtagatg 29757299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 29470613 - 29470726
Alignment:
Q  69 ctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgt 168  Q
    |||||||||||||| ||||| | ||||| |||  | ||| | || || |||||||| |||| | |||| ||||||||||||  |||||| |||||||||     
T  29470613 ctcaggagtattccgcctctcaagttggcttctctggaagaactcgatctttcacagtgttcttgtcttgagagttttccacctgtggtagatgggttgg 29470712  T
Q  169 tggataaacttaaa 182  Q
    ||||||||||||||    
T  29470713 tggataaacttaaa 29470726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 29720117 - 29720016
Alignment:
Q  59 ttgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtg 158  Q
    ||||||||||||||| | ||| |||||||| | |||||||||| ||||||  || ||  ||||  ||||| ||||||| |||||||||||| ||||||||    
T  29720117 ttgtcgcaatctcagaattataccacctctcaagttggattcactagaaacactagaattttcgaattgtcatagtcttgagagttttccacttgtggtg 29720018  T
Q  159 ga 160  Q
    ||    
T  29720017 ga 29720016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 29721244 - 29721144
Alignment:
Q  60 tgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtgg 159  Q
    ||||||| |||||| ||| |||||||||| | |||||||||| ||||||  ||  | ||||||  |||| ||||||| |||||||||||| |||||||||    
T  29721244 tgtcgcagtctcagaagttttccacctctcaagttggattcactagaaacactaaaactttcattttgtcatagtcttgagagttttccacttgtggtgg 29721145  T
Q  160 a 160  Q
    |    
T  29721144 a 29721144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 29721373 - 29721285
Alignment:
Q  72 aggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtgga 160  Q
    ||||||||||||||||| | |||||||||| ||||||  ||  | ||||||  |||| ||||||| |||||||||||| ||||||||||    
T  29721373 aggagtattccacctctcaagttggattcactagaaacactaaaactttcattttgtcatagtcttgagagttttccacttgtggtgga 29721285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 29690454 - 29690375
Alignment:
Q  49 ttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgt 128  Q
    |||||||| |||||| |||||| |||||||||||| |||| | ||| |||||| | ||||| |||||||| |||||||||    
T  29690454 ttgttaaaaattgtcacaatcttaggagtattccagctctcaagttagattcacttgaaaaacttgacctatcacattgt 29690375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 29664218 - 29664105
Alignment:
Q  69 ctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgt 168  Q
    |||||||||||||||||||| |  |||| |||  ||||| | ||||| |||||| | ||||   |||| ||||||||||||   |||||||||||||||     
T  29664218 ctcaggagtattccacctctcaacttggcttctctagaagaacttgatctttcagagtgttcatgtcttgagagttttccaccagtggtggatgggttgg 29664119  T
Q  169 tggataaacttaaa 182  Q
     |||||||||||||    
T  29664118 cggataaacttaaa 29664105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 28488976 - 28488882
Alignment:
Q  72 aggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    |||||||||||| |||| | ||| | |||  ||||| | ||||| |||||| |||||  |||||| |||||||||||||| |||| |||||||||    
T  28488976 aggagtattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagttttccaatagtggaggatgggtt 28488882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 29756978 - 29756872
Alignment:
Q  60 tgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtgg 159  Q
    |||| |||||||| ||||||||||||||| | |||| ||||| | ||||  |||||| |||||   ||| |||| |||||||| ||||||  ||||||||    
T  29756978 tgtcacaatctcaagagtattccacctctcaagttgaattcactggaaacccttgacttttcatcatgtcataggctcgagagctttccacctgtggtgg 29756879  T
Q  160 atgggtt 166  Q
    | |||||    
T  29756878 acgggtt 29756872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 29801386 - 29801292
Alignment:
Q  72 aggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    |||||||||||| |||| | ||| | |||  ||||| | ||||| |||||| |||||  |||||| |||||||||||||| |||| |||||||||    
T  29801386 aggagtattccaactctcatgttagcttctctagaagaacttgatctttcagattgtattagtcttgagagttttccaatagtggaggatgggtt 29801292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 617758 - 618136
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||||||||||||||||||||||| ||||||||||| |  ||||| ||||||||||||||| |||||||| |  |||||||| |||||||| |||||||    
T  617758 gatgggtttcttggaaaacttaaaaccctacttgttacaagttgtcacaatctcaggagtatcccacctctcaatttggattctttagaaaaacttgacc 617857  T
Q  118 tttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgag 217  Q
    |||||  ||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||  |||| ||| ||||| ||     
T  617858 tttcatgttgttgtagtcttgagagttttccattggtggtggatgggttgttggataaacttaaattcttgaatatcgaatgttgcatcatgcttaggaa 617957  T
Q  218 tatcccatcgctcaggttgacctcattggaacggttcaatctttcacattgtcagagcctagagagatttccaaaaatattgggagagatgaataatata 317  Q
    |||||||  |||||||||||| |  |||||||  ||||||||||||  |||| | || || ||||| |||||| ||||||||||||||||||  ||| ||    
T  617958 tatcccacggctcaggttgactttgttggaacatttcaatctttcatgttgttatagtcttgagagttttccagaaatattgggagagatgagaaatgta 618057  T
Q  318 acagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattat 396  Q
     ||| | | | ||||||| | |||| |||| ||||||||||||||||||||||||||||||| |  |||||||||||||    
T  618058 ccaggagtcctcttggatgaaactcccataaaagaattgccgtttccatttcaaaatcttacacaacctcaaacattat 618136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 617620 - 617765
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| ||| ||||||| |  ||||| ||||||||||||||||||||||||   |||||||||| | ||||| ||||||||||    
T  617620 gggtttcttggaaaacttaaaacccttcttgttacaagttgtcacaatctcaggagtattccacctctccagttggattcacttgaaaaacttgaccttt 617719  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    || |||||||||| ||||||||||||||| ||||||||||||||||    
T  617720 caaattgttataggctcgagagttttccacttgtggtggatgggtt 617765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 617194 - 617336
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||||||||||||||||||| ||| ||| |||| | || |||||| |||||| ||||||||||||||||||| |||||||||| ||||||   ||||||    
T  617194 gatgggtttcttggaaaacttgaaacccttcttgctgaaaattgtcacaatcttaggagtattccacctcttaagttggattcactagaaacatttgacc 617293  T
Q  118 tttcacattgttatagtctcgagagttttccaattgtggtgga 160  Q
    |||||  |||||||||||| |||||||||||| ||||||||||    
T  617294 tttcatgttgttatagtcttgagagttttccacttgtggtgga 617336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 617056 - 617201
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| |||||||||||    |||| |||||||||| |||||||||||||| | |||||||||  |||||||  |||||||||    
T  617056 gggtttcttggaaaacttaaaaccctacttgttactagttgtggcaatctcagaagtattccacctctcaagttggattcgctagaaaaatttgaccttt 617155  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    |  |||||  |||||| |||||||||||| | ||||||||||||||    
T  617156 cttattgtggtagtcttgagagttttccattggtggtggatgggtt 617201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 617479 - 617615
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| ||| | ||||| |  ||||| |||||||||||||||||||||||| | ||||||||   ||||| | ||||||||||    
T  617479 gggtttcttggaaaacttaaaaccctgcgtgttacaagttgtcacaatctcaggagtattccacctctcaagttggatttgctagaagaacttgaccttt 617578  T
Q  121 cacattgttatagtctcgagagttttccaattgtggt 157  Q
    || |||||||||| ||||||| ||||||| |||||||    
T  617579 caaattgttataggctcgagaattttccacttgtggt 617615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 617341 - 617483
Alignment:
Q  24 tttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcac 123  Q
    ||||||||||||||||||| | ||||||||| |  ||||| |||||| | |||||| ||||| || | ||||||||| |||||||  ||||||||||||     
T  617341 tttcttggaaaacttaaaaccttacttgttacaagttgtcacaatcttaagagtatcccaccgctcaagttggattctttagaaacacttgacctttcat 617440  T
Q  124 attgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
     ||||||| | ||||| ||||||||| |||||||||| |||||    
T  617441 gttgttattggctcgaaagttttccacttgtggtggacgggtt 617483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 616915 - 617043
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| | | |||||||||  ||||| ||| |||| ||||||||||||||| | ||||||| || ||||||  ||||| ||||    
T  616915 gggtttcttggaaaacttaaaaccttgcttgttaaaagttgtcacaacctcaagagtattccacctctcaagttggatgcactagaaacacttgatcttt 617014  T
Q  121 cacattgttatagtctcgagagttttcca 149  Q
    ||  |||||||||||| || |||||||||    
T  617015 catgttgttatagtcttgaaagttttcca 617043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 616774 - 616881
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    ||||||||||||||||||||||  |||||||||||   |||   ||| || ||||||||||||||||| | ||||||||   ||||||| ||||||||||    
T  616774 gggtttcttggaaaacttaaaactctacttgttaatagttgcatcaagctaaggagtattccacctctcaagttggatttgctagaaaaacttgaccttt 616873  T
Q  121 cacattgt 128  Q
    || |||||    
T  616874 catattgt 616881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 616684 - 616778
Alignment:
Q  72 aggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    ||||||||||||||||| | ||||||||   ||||||  ||| ||||||||  |||||||||||| |||||||||||| ||||| |||| |||||    
T  616684 aggagtattccacctctcaagttggatttgctagaaacacttaacctttcatgttgttatagtcttgagagttttccacttgtgatggacgggtt 616778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 116; Significance: 8e-59; HSPs: 8)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 21 - 396
Target Start/End: Complemental strand, 210441 - 210066
Alignment:
Q  21 gggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgaccttt 120  Q
    |||||||||||||||||||||| ||| ||||||| | |||||  |||||| | ||| || |||||||| | ||||||||||||||||   ||||||||||    
T  210441 gggtttcttggaaaacttaaaaccctgcttgttacaaattgttacaatcttaagagcatcccacctctcaagttggattcattagaagtacttgaccttt 210342  T
Q  121 cacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgagtat 220  Q
    ||  ||||| |||||| || |||||||||  ||||||||||| ||||||||||||||||||||||||||  || |||  |||| ||| ||||| || |||    
T  210341 catgttgttgtagtcttgaaagttttccatgtgtggtggatgagttgttggataaacttaaattcttgaacattgaatgttgcatcatgcttaggaatat 210242  T
Q  221 cccatcgctcaggttgacctcattggaacggttcaatctttcacattgtcagagcctagagagatttccaaaaatattgggagagatgaataatataaca 320  Q
    |||   ||| |||||||| ||||||||||  |||||||||||| ||||| | || ||  |||| |||||| ||||||||||||||||||  |||||  ||    
T  210241 cccgcggcttaggttgacttcattggaacatttcaatctttcatattgttatagtctcaagagttttccagaaatattgggagagatgagaaatatgcca 210142  T
Q  321 gaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatcttactccgcctcaaacattat 396  Q
    | | | | | ||||| | |||| |||| |||||||||||||||||||| |||||||||| |  ||| |||||||||    
T  210141 ggagtcctcatggatgaaactcccataaaagaattgccgtttccatttaaaaatcttacccaacctaaaacattat 210066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 236746 - 236561
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||||||||||||||||||||||| | | ||||||| | |||||| ||||||||| ||||| |||||||| | |||||| || |||||||  |||||||    
T  236746 gatgggtttcttggaaaacttaaaaccttgcttgttagaaattgtcacaatctcagaagtatcccacctctcaagttggaatccttagaaagacttgacc 236647  T
Q  118 tttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgc 203  Q
    ||||| | |||| ||| ||| |||||||| ||  ||| ||||| |||||  | || |||||||||||||||| ||| |||||||||    
T  236646 tttcaaactgttgtaggctcaagagtttttcacatgtagtggacgggtttcttgaaaaacttaaattcttgaatattgaacattgc 236561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 23 - 166
Target Start/End: Complemental strand, 236882 - 236739
Alignment:
Q  23 gtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttca 122  Q
    |||||||||||||||||||| ||||||| || ||  ||||| ||||||||| ||||| ||| |||| | ||||||||| |||||||| ||| ||||||||    
T  236882 gtttcttggaaaacttaaaaccctacttattgaaggttgtcacaatctcagaagtataccagctctcaagttggattccttagaaaaacttaacctttca 236783  T
Q  123 cattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
     |||||| ||| ||| |||||||||||  |||||||||||||||    
T  236782 aattgttgtaggctcaagagttttccatgtgtggtggatgggtt 236739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 237028 - 236886
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||||||||||||||||||||||| |||   ||||||   ||||||| |||||||||||||||||||||| | |||||||||  ||||| | |||| |     
T  237028 gatgggtttcttggaaaacttaaaaccctgaatgttaatagttgtcgcgatctcaggagtattccacctctcaagttggattctctagaagaacttg-ct 236930  T
Q  118 tttc-acattgttatagtctcgagagttttccaattgtggtgga 160  Q
    |||| | ||||||||||||| ||| |||||||||||||||||||    
T  236929 tttcaatattgttatagtcttgagcgttttccaattgtggtgga 236886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 394
Target Start/End: Complemental strand, 236472 - 236354
Alignment:
Q  276 ctagagagatttccaaaaatattgggagagatgaataatataacagaaattcacttggataatactctcatacaagaattgccgtttccatttcaaaatc 375  Q
    |||||||| |||||||||||| |||||  ||||   |||||| |   | ||| ||||||| | ||||||||| ||||||||| |||||| ||| ||||||    
T  236472 ctagagagttttccaaaaataatgggattgatgtgaaatataccgcgacttctcttggatgaaactctcataaaagaattgctgtttccgttttaaaatc 236373  T
Q  376 ttactccgcctcaaacatt 394  Q
    ||||||| ||| |||||||    
T  236372 ttactccacctgaaacatt 236354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 237115 - 237021
Alignment:
Q  72 aggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggtt 166  Q
    |||||||| |||||||| | |||||||||  ||||||  ||| |||| |||  |||| ||||||| ||||||||||||  |||||||||||||||    
T  237115 aggagtatcccacctctcaagttggattcgctagaaacccttaacctctcatgttgtgatagtcttgagagttttccacctgtggtggatgggtt 237021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 210531 - 210445
Alignment:
Q  72 aggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtg 158  Q
    ||||||||||||||||| | |||| ||||  ||||||  |||||  |||||  |||| |||| ||||||||||||||| ||||||||    
T  210531 aggagtattccacctctcaagttgaattcgctagaaacccttgatttttcatcttgtcataggctcgagagttttccacttgtggtg 210445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 200109 - 200045
Alignment:
Q  118 tttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaa 182  Q
    ||||| ||||| ||||||||||||||||||||  ||||||||| ||  |||| | ||||||||||    
T  200109 tttcatattgtgatagtctcgagagttttccatctgtggtggagggaatgttaggtaaacttaaa 200045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 79 - 366
Target Start/End: Original strand, 12591378 - 12591665
Alignment:
Q  79 ttccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaact 178  Q
    |||||||||| | |||||||||  ||||||| |||||||||||| |||||||||  |||||||||||| ||| ||||| |||||||||||||||||||||    
T  12591378 ttccacctctcaagttggattcgctagaaaaacttgacctttcaaattgttatatgctcgagagtttttcaagtgtggcggatgggttgttggataaact 12591477  T
Q  179 taaattcttgagtatggaacattgcgtcaagcttacgagtatcccatcgctcaggttgacctcattggaacggttcaatctttcacattgtcagagccta 278  Q
    ||||||||||| ||| ||| | ||| ||| ||||| |||||| |||  ||||| |||||| || || ||||  |||||| |||||  |||| | || ||     
T  12591478 taaattcttgaatattgaatactgcatcatgcttaggagtattccacggctcacgttgacttctttagaacatttcaatatttcatgttgttatagtctt 12591577  T
Q  279 gagagatttccaaaaatattgggagagatgaataatataacagaaattcacttggataatactctcatacaagaattgccgtttccat 366  Q
    ||||| || ||| ||||||||| |||  |||  |||||| ||| | ||| ||||||||| |||  |||| |||||||||||| |||||    
T  12591578 gagagtttaccagaaatattggaagatctgagaaatataccaggacttcgcttggataaaacttccataaaagaattgccgtctccat 12591665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 74111 - 74351
Alignment:
Q  18 gatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacc 117  Q
    ||||||||||||||||||||||||| | | ||||||     ||||  || ||||| |||||||||| |||| | |||||||||  | |||||||||||||    
T  74111 gatgggtttcttggaaaacttaaaaccttgcttgtt-----ttgttacattctcaagagtattccagctctcaagttggattcgcttgaaaagcttgacc 74205  T
Q  118 tttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaattcttgagtatggaacattgcgtcaagcttacgag 217  Q
    |||||  |||||||||||| |||| |||||||  |||||| ||||||||||||||||||||||||||||||| ||| ||| |||||  || || || ||     
T  74206 tttcattttgttatagtcttgagaattttccatgtgtggtagatgggttgttggataaacttaaattcttgaatattgaatattgcaccatgcataggaa 74305  T
Q  218 tatcccatcgctcaggttgacctcattggaacggttcaatctttca 263  Q
    ||||||   ||||| |||||| || |||||||  ||||||||||||    
T  74306 tatccctcggctcaagttgacttcgttggaacaattcaatctttca 74351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 435
Target Start/End: Original strand, 74364 - 74448
Alignment:
Q  351 gaattgccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtttatttatcgaatagag 435  Q
    ||||| |||||||||||| |||||| ||||| || || ||||| ||||||||| || ||||||  |||||||||| | |||||||    
T  74364 gaatttccgtttccatttgaaaatcatactctgcttccaacatcatatccatgcaaatgtggaactgtttatttaccaaatagag 74448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 180
Target Start/End: Complemental strand, 5920225 - 5920104
Alignment:
Q  59 ttgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtg 158  Q
    |||| ||||||||| |||||| |||||||| | ||||| |||| | ||| | ||||| |||||| ||||| |||||||||||||||||||||  ||||||    
T  5920225 ttgtagcaatctcaagagtatcccacctctaaagttggcttcactggaagaacttgatctttcatattgtgatagtctcgagagttttccaacagtggtg 5920126  T
Q  159 gatgggttgttggataaactta 180  Q
    ||||| || |||| ||||||||    
T  5920125 gatggatttttgggtaaactta 5920104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 5920831 - 5920666
Alignment:
Q  17 agatgggtttcttggaaaacttaaaatcctacttgttaaatattgtcgcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgac 116  Q
    ||||||||||||||  ||||||||| |||||  ||||| ||||||| |||| |||| || |||||||||||| | ||||| | | || ||| | || ||     
T  5920831 agatgggtttcttgataaacttaaactcctaagtgttagatattgttgcaagctcaagaatattccacctctcaagttgggtgctttggaacaactcgat 5920732  T
Q  117 ctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaacttaaa 182  Q
    |||||| ||||  |||| || ||||||||||||   ||||||||||||||||||| ||||||||||    
T  5920731 ctttcatattgcaatagccttgagagttttccacccgtggtggatgggttgttgggtaaacttaaa 5920666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 5921058 - 5920940
Alignment:
Q  72 aggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttgg 171  Q
    ||||||||||||||||||| | ||| |||| | ||| | ||| | |||| | ||||| ||||||||||| |||||||| ||||||||||||||||  |||    
T  5921058 aggagtattccacctcttaagatggcttcacttgaagaacttaatcttttatattgtgatagtctcgagtgttttccacttgtggtggatgggttactgg 5920959  T
Q  172 ataaacttaaattcttgag 190  Q
    | ||||||||| |||||||    
T  5920958 agaaacttaaaatcttgag 5920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 419
Target Start/End: Complemental strand, 5919323 - 5919160
Alignment:
Q  256 atctttcacattgtcagagcctagagagatttccaaaaatattgggagagatgaataatataacagaaattcacttggataatactctcatacaagaatt 355  Q
    |||||||| ||||| | | ||| ||||| |||||||||||||| ||||||||| | ||||||| | || ||||| || |||  |||| |||| | |||||    
T  5919323 atctttcatattgtgataaccttgagagttttccaaaaatattaggagagatggaaaatataagacaagttcacctgtatacaactcccataaaggaatt 5919224  T
Q  356 gccgtttccatttcaaaatcttactccgcctcaaacattatatccatgtaactgtggagttgtt 419  Q
    ||| ||| | ||||||||||||||||  | || |||||||||||  ||||| |||||| |||||    
T  5919223 gccattttcttttcaaaatcttactcgacttcgaacattatatctttgtaattgtggaattgtt 5919160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 193
Target Start/End: Complemental strand, 5920064 - 5919950
Alignment:
Q  79 ttccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgggttgttggataaact 178  Q
    |||||||||| | ||||| ||| ||||||   ||||| |||||| ||||| ||| |||||||||||||||  || |||||||||| ||  ||||||||||    
T  5920064 ttccacctctcaagttggcttctttagaagtacttgatctttcatattgtgataatctcgagagttttcctcttttggtggatggatttatggataaact 5919965  T
Q  179 taaattcttgagtat 193  Q
    | |||||||||||||    
T  5919964 tcaattcttgagtat 5919950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 5919938 - 5919838
Alignment:
Q  64 gcaatctcaggagtattccacctcttaggttggattcattagaaaagcttgacctttcacattgttatagtctcgagagttttccaattgtggtggatgg 163  Q
    |||| |||||||| ||||||||||| | ||||| || | | ||| |  |||| |||||| ||||| ||||||| | ||||||||||  ||||||||||||    
T  5919938 gcaagctcaggagcattccacctctcaagttggctttactggaacattttgatctttcatattgtgatagtcttgtgagttttccacctgtggtggatgg 5919839  T
Q  164 g 164  Q
    |    
T  5919838 g 5919838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University