View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20302_high_6 (Length: 283)

Name: NF20302_high_6
Description: NF20302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20302_high_6
NF20302_high_6
[»] chr7 (6 HSPs)
chr7 (15-183)||(15490544-15490712)
chr7 (14-188)||(15432188-15432361)
chr7 (196-266)||(15491233-15491303)
chr7 (16-101)||(6081448-6081534)
chr7 (196-241)||(15567929-15567974)
chr7 (102-171)||(6081564-6081637)
[»] scaffold1195 (1 HSPs)
scaffold1195 (15-101)||(1290-1377)
[»] chr5 (4 HSPs)
chr5 (16-101)||(29527131-29527217)
chr5 (102-171)||(29527028-29527101)
chr5 (16-101)||(39702698-39702784)
chr5 (109-175)||(39702591-39702661)
[»] chr1 (4 HSPs)
chr1 (16-101)||(10582947-10583033)
chr1 (16-101)||(49122375-49122461)
chr1 (102-171)||(10583063-10583136)
chr1 (102-171)||(49122491-49122564)
[»] scaffold0227 (1 HSPs)
scaffold0227 (16-101)||(11323-11409)
[»] chr6 (2 HSPs)
chr6 (16-101)||(18132869-18132955)
chr6 (102-171)||(18132766-18132839)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 15490544 - 15490712
Alignment:
Q  15 aaaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtgtgcctatcggtggttgatttgtgtggagaaacattaagttgttggagg 114  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||    
T  15490544 aaaattcacagtagggggaaaatggacatgccacagtttaacggcagaggtgtgcctatcggtggttgatttgtgtcgagaaacattaagtttctggagg 15490643  T
Q  115 cggtgaaattcttgcgaaaccgtgcatatggtggcagcggtggagttgatgccatctacatatgctagt 183  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  15490644 cggtgaaattcttgtgaaactgtgcatatggtggcagcggtggagttgatgtcatctacatatgctagt 15490712  T

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Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 15432188 - 15432361
Alignment:
Q  14 gaaaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtgtgcctatcggtggttgatttgtgtggagaaacattaagttgttggag 113  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||| |||||    
T  15432188 gaaaattcacagtagggggaagatggacatgccccagtttggcggcagaggtgtgcctatcggtggttgatttgt-tcgagaatcattaagttgctggag 15432286  T
Q  114 gcggtgaaattcttgcgaaaccgtgcatatggtggcagcggtggagttgatgccatctacatatgctagtcagcg 188  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  15432287 gcggtgaaattcttgcgaaaacgtgcatacggtggcagctgtggagttgatgccatctacatatgctagttagcg 15432361  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 15491233 - 15491303
Alignment:
Q  196 taattgcaacatactcaaaggtggtgattcagaaaggtgatccatatatagataaatccaattctgattct 266  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15491233 taattgcaacatactcaaaggtggtgattcagaaaggtgaaccatatatagataaatccaattctgattct 15491303  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 6081448 - 6081534
Alignment:
Q  16 aaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtg-tgcctatcggtggttgatttgtgtggagaaacatt 101  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||  |||  || ||| |||||||||||||| | ||||||||||    
T  6081448 aaattcacagtagagggaaaatggacatgccacaatttgatggcagcagtgacgcttattggtggttgatttgtattgagaaacatt 6081534  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 15567929 - 15567974
Alignment:
Q  196 taattgcaacatactcaaaggtggtgattcagaaaggtgatccata 241  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  15567929 taattgcaacatactcaaaggtgatgattgagaaaggtggtccata 15567974  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 6081564 - 6081637
Alignment:
Q  102 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 171  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||| ||||||||||    
T  6081564 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagtcgatgccatct 6081637  T

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Target: scaffold1195 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 1290 - 1377
Alignment:
Q  15 aaaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtg-tgcctatcggtggttgatttgtgtggagaaacatt 101  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||    
T  1290 aaaattcacagttgggggaaaatagacatgccacagtttgacggcagcggtgatgcctatcggtggttgatttgtgtggagaagcatt 1377  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 29527217 - 29527131
Alignment:
Q  16 aaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtg-tgcctatcggtggttgatttgtgtggagaaacatt 101  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||  |||  || ||| |||||||||||||| | ||||||||||    
T  29527217 aaattcacagtagagggaaaatggacatgccacaatttgatggcagcagtgacgcttattggtggttgatttgtattgagaaacatt 29527131  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 29527101 - 29527028
Alignment:
Q  102 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 171  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||||||||||||||    
T  29527101 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagttgatgccatct 29527028  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 39702784 - 39702698
Alignment:
Q  16 aaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtg-tgcctatcggtggttgatttgtgtggagaaacatt 101  Q
    |||||| || ||| |||| |||||||||||||   |||||||||||  ||| ||||||| |||||||||||||| | ||||||||||    
T  39702784 aaattctcaatagagggataatggacatgccaacatttgacggcagcagtgatgcctattggtggttgatttgtattgagaaacatt 39702698  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 39702661 - 39702591
Alignment:
Q  109 tggaggcggtgaaattcttgcgaaaccgtgc----atatggtggcagcggtggagttgatgccatctacat 175  Q
    |||||||||||||| | ||| ||||||||||    ||||||||| || |||||||| ||||||||||||||    
T  39702661 tggaggcggtgaaagtattgtgaaaccgtgctctcatatggtggaagtggtggagtcgatgccatctacat 39702591  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 10582947 - 10583033
Alignment:
Q  16 aaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtg-tgcctatcggtggttgatttgtgtggagaaacatt 101  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||  |||  || ||| |||||||||||||| | ||||||||||    
T  10582947 aaattcacagtagagggaaaatggacatgccacaatttgatggcagcagtgacgcttattggtggttgatttgtattgagaaacatt 10583033  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 49122375 - 49122461
Alignment:
Q  16 aaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtg-tgcctatcggtggttgatttgtgtggagaaacatt 101  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||  |||  || ||| |||||||||||||| | ||||||||||    
T  49122375 aaattcacagtagagggaaaatggacatgccacaatttgatggcagcagtgacgcttattggtggttgatttgtattgagaaacatt 49122461  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 10583063 - 10583136
Alignment:
Q  102 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 171  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||| ||||||||||    
T  10583063 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagtcgatgccatct 10583136  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 49122491 - 49122564
Alignment:
Q  102 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 171  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||| ||||||||||    
T  49122491 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagtcgatgccatct 49122564  T

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Target: scaffold0227 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 11323 - 11409
Alignment:
Q  16 aaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtg-tgcctatcggtggttgatttgtgtggagaaacatt 101  Q
    ||||||||||||| |||||||||||||||||||| ||||| |||||   ||  || ||| |||||||||||||| | ||||||||||    
T  11323 aaattcacagtagagggaaaatggacatgccacaatttgatggcagcaatgacgcttattggtggttgatttgtattgagaaacatt 11409  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 18132955 - 18132869
Alignment:
Q  16 aaattcacagtagggggaaaatggacatgccacagtttgacggcagaggtg-tgcctatcggtggttgatttgtgtggagaaacatt 101  Q
    ||||||| ||||| |||||||||||||||||||| ||||| |||||  |||  || ||| |||||||||||||| | ||||||||||    
T  18132955 aaattcagagtagagggaaaatggacatgccacaatttgatggcagcagtgacgcttattggtggttgatttgtattgagaaacatt 18132869  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 18132839 - 18132766
Alignment:
Q  102 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 171  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||| |||| |||||    
T  18132839 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagtcgatggcatct 18132766  T

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