View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20302_low_12 (Length: 235)
Name: NF20302_low_12
Description: NF20302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20302_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 54775586 - 54775802
Alignment:
| Q |
1 |
aataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcatacccaccacttgggttgtattcatttacttctttcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775586 |
aataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcatacccaccacttgggttgtattcatttacttctttcaag |
54775685 |
T |
|
| Q |
101 |
gctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775686 |
gctgtttcaacagctgaatatatctcatctccccattcctgcttgagctttttcaatttctcatcttcctcatttataactgactgtgtcaatataacag |
54775785 |
T |
|
| Q |
201 |
tattaccgtgttaatta |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
54775786 |
tattaccgtgttaatta |
54775802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 54794053 - 54793837
Alignment:
| Q |
1 |
aataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcatacccaccacttgggttgtattcatttacttctttcaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54794053 |
aataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagaatacccaccacttgggttgtattcatttacttctttcaag |
54793954 |
T |
|
| Q |
101 |
gctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54793953 |
gctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacag |
54793854 |
T |
|
| Q |
201 |
tattaccgtgttaatta |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
54793853 |
tattaccgtgttaatta |
54793837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 52286734 - 52286517
Alignment:
| Q |
1 |
aataacttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcatacccaccacttgggttgtattcatttacttctttcaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52286734 |
aataacttcttttagtgttgccttcctctgttccttgaagttccacagctcatatacagcatacccaccacttggattgtattcatttacttctttcaag |
52286635 |
T |
|
| Q |
101 |
gctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| || |
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|
| T |
52286634 |
gctgtttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaacttctcatcttcctcattcatgactgactgtgtcaatataatag |
52286535 |
T |
|
| Q |
201 |
tattaccgtgttaattat |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
52286534 |
tattaccgtgttaattat |
52286517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 801893 - 801680
Alignment:
| Q |
5 |
acttcttttagtgttgccttcctctgttccttgaagttccatagctcatgtacagcatacccaccacttgggttgtattcatttacttctttcaaggctg |
104 |
Q |
| |
|
|||||||| |||||||||||||| | ||| ||||||||||| ||||| |||| ||||||||||||||||||||| || || |||||||| ||||||| |
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|
| T |
801893 |
acttctttcagtgttgccttcctattttctttgaagttccacagctcccaaacagtatacccaccacttgggttgtactcgttaacttcttttaaggctg |
801794 |
T |
|
| Q |
105 |
tttcaacagctgaatatatctcatctccccattcctgcttgagcttttttaatttctcatcttcctcatttataactgactgtgtcaatataacagtatt |
204 |
Q |
| |
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|| ||||||||||||||||||| ||||||||||||| ||| ||||||| || ||||||||||||||||| |||||||||||||||||||| |||| |||| |
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|
| T |
801793 |
ttacaacagctgaatatatctcgtctccccattccttcttcagcttttgtagtttctcatcttcctcatctataactgactgtgtcaatacaacaatatt |
801694 |
T |
|
| Q |
205 |
accgtgttaattat |
218 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
801693 |
accgtgttaattat |
801680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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