View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20302_low_13 (Length: 228)
Name: NF20302_low_13
Description: NF20302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20302_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 28147662 - 28147440
Alignment:
| Q |
6 |
aagaaacttatgagaattcactagtgtataaataagattttactgtggatcttttacactaattcattacacaagtgatgtaaaacaatgatggtaattt |
105 |
Q |
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| T |
28147662 |
aagaaacttatgagaattcactagtgtataaataagattttactgtggatcttttagactaattcattacacaagtgatgtaaaacaatgatggtaattt |
28147563 |
T |
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| Q |
106 |
tgaaattaaatcaatgttttttcatattgatcgctattttaaatgacataaaatatacttttacatgaggttataattcagcaaatataaaaacttatta |
205 |
Q |
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| T |
28147562 |
tgaaattaaatcaatgttttttcatattgatcgctattttaaatgacataaaatgtacttttacataaggttataattcagcaaatataaaaacttatta |
28147463 |
T |
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| Q |
206 |
gaaatgatgttttttaacgaata |
228 |
Q |
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| T |
28147462 |
gaaatgatgttttttaacgaata |
28147440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 28151701 - 28151495
Alignment:
| Q |
6 |
aagaaacttatgagaattcactagtgtataaataagattttactgtggatcttttacactaattcattacacaagtgatgtaaaacaatgatggtaattt |
105 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| |||||| |
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| T |
28151701 |
aagaaacttatgagaattcactagtgcagaaataagattttattgtggatcttttacactagttcattacacaattgatgtaaaacaatgatgctaattt |
28151602 |
T |
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| Q |
106 |
tgaaattaaatcaatgttttttcatattgatcgctattttaaatgacataaaatatacttttacatgaggttataattcagcaaatataaaaacttatta |
205 |
Q |
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| T |
28151601 |
tgcgattaaatcaaatttttttcatattgattgctatgttaaatgatgt-aaatatacttttacataaggt--------aacaaatataaaaacttatta |
28151511 |
T |
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| Q |
206 |
gaaatgatgtttttta |
221 |
Q |
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| T |
28151510 |
gaaatgatgtttttta |
28151495 |
T |
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