View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20302_low_3 (Length: 498)
Name: NF20302_low_3
Description: NF20302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20302_low_3 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| |
|
| [»] scaffold0038 (4 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 34 - 493
Target Start/End: Original strand, 28185883 - 28186342
Alignment:
| Q |
34 |
tgtatttatacaactattattaataaattgatgtggttgtgaatttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
28185883 |
tgtatttatacaactattattaataaattgatgtggctgtgaatttgtgatgcacttaatcaaacttattttattgggtaggaatggctatgaacacgag |
28185982 |
T |
|
| Q |
134 |
tttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaag |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
28185983 |
tttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgatttccctgttggtatcgagtctagggttctaaaag |
28186082 |
T |
|
| Q |
234 |
taaattcacttatggattttggatctaatggcgaagttcagatgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagttta |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28186083 |
taaattcacttatggattttggatctaatggtgaagttcagatgctagggatctatgggcctggaggaatgggaaagacgacacttgcaagagcagttta |
28186182 |
T |
|
| Q |
334 |
taattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctt |
433 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28186183 |
taattccctagctgatcaatttgatgatttgtgttttcttcacgatgtaaggggaaattcagctaaatatggtttggagcatctgcagggaaagctcctt |
28186282 |
T |
|
| Q |
434 |
tctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcata |
493 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28186283 |
tctaaattagtcaaactggacattaagttaggagatgtctacgagggaattccaatcata |
28186342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 34 - 498
Target Start/End: Original strand, 28227443 - 28227906
Alignment:
| Q |
34 |
tgtatttatacaactattattaataaattgatgtggttgtgaatttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||| |
|
|
| T |
28227443 |
tgtatttatacaactattattaataaattgatatgattgtgaatttgtgatgcatttactcaaa-ttatttgattgggtaggaatggctatgaatgcgag |
28227541 |
T |
|
| Q |
134 |
tttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaag |
233 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||| || |||| |
|
|
| T |
28227542 |
tttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccgattaccctgttggtgttgaatctagggtcctaaaag |
28227641 |
T |
|
| Q |
234 |
taaattcacttatggattttggatctaatggcgaagttcagatgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagttta |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| |||||| |||||||||| ||| | | |||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
28227642 |
taaattcacttatggatgttggatctaatggtgaagcacagatgatagggatctacgggaatcgtggaatgggaaagacaacacttgcaagggcagttta |
28227741 |
T |
|
| Q |
334 |
taattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctt |
433 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||| ||| |||| ||||| |
|
|
| T |
28227742 |
taattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagctaaatatggtttagagcatctataggtaaagatcctt |
28227841 |
T |
|
| Q |
434 |
tctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataaagca |
498 |
Q |
| |
|
|| |||||||||||| |||| |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
28227842 |
tccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaagca |
28227906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 76 - 498
Target Start/End: Complemental strand, 28297390 - 28296968
Alignment:
| Q |
76 |
atttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaat |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
28297390 |
atttgtgatgcatttactcaaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaat |
28297291 |
T |
|
| Q |
176 |
catgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaagtaaattcacttatggattttggatctaatggcgaagttcaga |
275 |
Q |
| |
|
| |||||||||||||||||| |||||||| |||||| | |||||||||| || |||||||||||| || ||||| | |||||||||| |||||||||| |
|
|
| T |
28297290 |
cgtgttcctttatatgttgccgattaccccgttggtctccagtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtgaagttcaga |
28297191 |
T |
|
| Q |
276 |
tgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttca |
375 |
Q |
| |
|
||||||||||||||||| || |||| | ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
28297190 |
tgctagggatctatgggactggagggatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttca |
28297091 |
T |
|
| Q |
376 |
tgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtcaac |
475 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
28297090 |
caatgtaagggaaaattcagctaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaac |
28296991 |
T |
|
| Q |
476 |
gagggaattccaatcataaagca |
498 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28296990 |
gagggaattccaatcataaagca |
28296968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 76 - 498
Target Start/End: Original strand, 28514683 - 28515105
Alignment:
| Q |
76 |
atttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaat |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||||||||||||| ||||| | |||||||||| |
|
|
| T |
28514683 |
atttgtgatgcatttactcaaacttatttgattggataggaatggatatgaatatgagtttattgagaagatagtcaaatacgtatccagcaagatcaat |
28514782 |
T |
|
| Q |
176 |
catgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaagtaaattcacttatggattttggatctaatggcgaagttcaga |
275 |
Q |
| |
|
| |||||||||||||||||| |||||||| |||||| | |||||||||| || |||||||||||| || ||||| | |||||||||| |||||||||| |
|
|
| T |
28514783 |
cgtgttcctttatatgttgccgattaccccgttggtctccagtctagggtcctaaaagtaaattcatttctggatctcagatctaatggtgaagttcaga |
28514882 |
T |
|
| Q |
276 |
tgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttca |
375 |
Q |
| |
|
||||||||||||||||| || |||| | ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
28514883 |
tgctagggatctatgggactggagggatgggaaagacaacacttgccagagcagtttataattccatagccgatcaatttgatggtttgtgttttcttca |
28514982 |
T |
|
| Q |
376 |
tgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtcaac |
475 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |||||||| |||| |||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
28514983 |
caatgtaagggaaaattcagctaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacgttaagttaggagatgtcaac |
28515082 |
T |
|
| Q |
476 |
gagggaattccaatcataaagca |
498 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
28515083 |
gagggaattccaatcataaagca |
28515105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 73 - 498
Target Start/End: Original strand, 28235096 - 28235519
Alignment:
| Q |
73 |
tgaatttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatc |
172 |
Q |
| |
|
||||||||||||||||| || | ||||||||| ||||||||||||| |||||| || ||| |||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
28235096 |
tgaatttgtgatgcattaaccaagacttatttg--tgtgtaggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatc |
28235193 |
T |
|
| Q |
173 |
aatcatgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaagtaaattcacttatggattttggatctaatggcgaagttc |
272 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| | |||||||||| || ||||||| |||| | ||||| ||||||||||||| ||||||| |
|
|
| T |
28235194 |
aatcatgttcctttatatgttgccgattaccctgttggtctcaagtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaagttc |
28235293 |
T |
|
| Q |
273 |
agatgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttct |
372 |
Q |
| |
|
|||||||||||||||||||| || | |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28235294 |
agatgctagggatctatgggactggtggaattggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttct |
28235393 |
T |
|
| Q |
373 |
tcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtc |
472 |
Q |
| |
|
||| || |||||| ||| |||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||| || |||||||||||||| |
|
|
| T |
28235394 |
tcacgacgtaagggaaaattcatctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtc |
28235493 |
T |
|
| Q |
473 |
aacgagggaattccaatcataaagca |
498 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
28235494 |
aatgagggaattccaatcataaagca |
28235519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 39 - 495
Target Start/End: Original strand, 28181612 - 28182068
Alignment:
| Q |
39 |
ttatacaactattattaataaattgatgtggttgtgaatttgtgatgcattta-ctcaaacttatttgattgtgtaggaatggttatgaacacgagttta |
137 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| | |||| ||||| |||| |||||||||||||||||| |||||||||| |||||| | ||||||| |
|
|
| T |
28181612 |
ttatacaactattattaa-aaattgatgtggttgagcatttatgatgtattttgctcaaacttatttgattgggtaggaatggatatgaatatgagttta |
28181710 |
T |
|
| Q |
138 |
ttgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaagtaaa |
237 |
Q |
| |
|
| || |||||||||||||| || || || ||||||||| |||||||||||||||||| |||||| ||||||| | ||||||||||| || |||||||| |
|
|
| T |
28181711 |
tcgaaaagatagtcaaatacgtttccaaaaagatcaattgtgttcctttatatgttgccgattactatgttggtctcgagtctagggtcctaaaagtaaa |
28181810 |
T |
|
| Q |
238 |
ttcacttatggattttggatctaatggcgaagttcagatgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagtttataat |
337 |
Q |
| |
|
|||| || ||||| | ||||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
28181811 |
ttcatttctggatgtcggatctaatggtgaagttcagatgctagggatctatgggactggaggaatgggaaagacgacgcttgcaagagcagtttataat |
28181910 |
T |
|
| Q |
338 |
tccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctttcta |
437 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | || ||||| || |||||||||||||||||| |||||||| |||| ||| |||||||| | |
|
|
| T |
28181911 |
tccatagctgatcaatttgatggtttgtgttttcttaacgacataagggcaaattcagctaaatatggtttagagcatctacaggaaaatctcctttcca |
28182010 |
T |
|
| Q |
438 |
aattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataaa |
495 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28182011 |
aattagctgaattggacgttaagttaggagatgtcaacgagggaactccaatcataaa |
28182068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 34 - 498
Target Start/End: Original strand, 28325968 - 28326432
Alignment:
| Q |
34 |
tgtatttatacaactattattaataaattgatgtggttgtgaatttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgag |
133 |
Q |
| |
|
|||||| ||||||| |||| || | |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
28325968 |
tgtattcatacaacagttatcaacacattgatgttattgtgaatttgcgatgcatttactcaaacttatttgattgggtaggaatggctatgaatacgag |
28326067 |
T |
|
| Q |
134 |
tttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaag |
233 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||| | |||||||||||||||||| ||||||||||| ||| | ||||||||| | || ||| |
|
|
| T |
28326068 |
tttattgagaagatagtcaaatacgtattcaggaagatcagttgtgttcctttatatgttgcggattaccctgtaggtctcgagtctaggatcctagaag |
28326167 |
T |
|
| Q |
234 |
taaattcacttatggattttggatctaatggcgaagttcagatgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagttta |
333 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| || | |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
28326168 |
taaattcacttatagatgttggatctaatggtaaagttcagatgctagggatctatgggactggtggaatgggaaagacaacacttgcaagagcagttta |
28326267 |
T |
|
| Q |
334 |
taattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctt |
433 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||| | || |||| || |||||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
28326268 |
taattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattcagctaaatatggtttagagcatctacaggaaaagctcctt |
28326367 |
T |
|
| Q |
434 |
tctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataaagca |
498 |
Q |
| |
|
|| |||||||||||| || || ||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
28326368 |
tccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcataaagca |
28326432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 81 - 496
Target Start/End: Original strand, 28243332 - 28243747
Alignment:
| Q |
81 |
tgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgt |
180 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||| |||| | ||| ||||||| ||| |
|
|
| T |
28243332 |
tgatgcatttactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgt |
28243431 |
T |
|
| Q |
181 |
tcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaagtaaattcacttatggattttggatctaatggcgaagttcagatgcta |
280 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||||| || ||||||||| | || | ||| | ||||||| ||| | |||||| |||||| |
|
|
| T |
28243432 |
tcctctatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaataaatttcttgatgtcggatctactggtgtagttcatatgcta |
28243531 |
T |
|
| Q |
281 |
gggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatg |
380 |
Q |
| |
|
|||||||||||| || | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
28243532 |
gggatctatgggactggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatg |
28243631 |
T |
|
| Q |
381 |
taaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtcaacgaggg |
480 |
Q |
| |
|
||||| ||| |||| ||||||||||||| |||||||| |||| |||||||||||| |||||||||||| |||||||| |||| |||||| |||||||||| |
|
|
| T |
28243632 |
taagggaaaattcaactaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgaggg |
28243731 |
T |
|
| Q |
481 |
aattccaatcataaag |
496 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
28243732 |
aattccaataataaag |
28243747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 231 - 498
Target Start/End: Original strand, 28503801 - 28504068
Alignment:
| Q |
231 |
aagtaaattcacttatggattttggatctaatggcgaagttcagatgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagt |
330 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| || | |||| ||||||||| ||||||||||||||||| |
|
|
| T |
28503801 |
aagtaaattcacttatagatgttggatctaatggtaaagttcagatgctagggatctatgggactggtggaatgggaaagacaacacttgcaagagcagt |
28503900 |
T |
|
| Q |
331 |
ttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctc |
430 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| | || |||| || |||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
28503901 |
ttataattccatagccgatcaatttgatggtttgtgttttcttaacgaaataagtgcaaattcagctaaatatggtttagagcatctacaggaaaagctc |
28504000 |
T |
|
| Q |
431 |
ctttctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataaagca |
498 |
Q |
| |
|
||||| |||||||||||| || || ||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
28504001 |
ctttccaaattagttgaattgtacgttaagttaggagatgtcaatgatggagttccaatcataaagca |
28504068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 314 - 498
Target Start/End: Complemental strand, 29843399 - 29843215
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagc |
413 |
Q |
| |
|
|||||||| ||||| ||||||||| || |||||| ||||||| ||||||||||||||| || | || |||||||||||||| |||| || |||| |
|
|
| T |
29843399 |
acacttgctcgagcaatttataatttgattgctgataaatttgaatgtttgtgttttcttcacgacgggagagaaagttcagctaaacatggcttagagc |
29843300 |
T |
|
| Q |
414 |
atctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataaagca |
498 |
Q |
| |
|
|||| || | ||||| ||||| ||| |||||| ||||||||||| |||||||||| || || ||||||||||| |||||||| |
|
|
| T |
29843299 |
atctccaagagaagcttctttccaaaacagttgatttggacattaagctaggagatgttaatgaaggaattccaataataaagca |
29843215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 357
Target Start/End: Complemental strand, 28098082 - 28097812
Alignment:
| Q |
87 |
atttactcaaacttatttgattgtgtaggaatggttatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttccttt |
186 |
Q |
| |
|
|||||||||||||||| | |||| |||||||| |||||| |||||||||| | | ||||||||||||||||| ||||| | |||||||| | ||| |
|
|
| T |
28098082 |
atttactcaaacttatcttattggccaggaatggatatgaattcgagtttattcgggaaatagtcaaatatgtatccaacaaattgaatcatgtcctttt |
28097983 |
T |
|
| Q |
187 |
atatgttgctgattaccctgttggtattgagtctagggttcttaaagtaaattcacttatggattttggatctaatggcgaagttcagatgctagggatc |
286 |
Q |
| |
|
| |||||| ||||||||| ||||| | | | | ||| | |||||||| |||||| | | |||||||||||| |||| ||||||| |||||| |
|
|
| T |
28097982 |
acatgttgttgattaccccgttggcctacaacatcgagttttaaaagtaaactcacttctaaaagttggatctaatgataaagtcaagatgcttgggatc |
28097883 |
T |
|
| Q |
287 |
tatgggcctagaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttga |
357 |
Q |
| |
|
||||| || |||| | || ||||| |||||||||| ||| |||||||||| ||| |||| ||||||||| |
|
|
| T |
28097882 |
tatggaccaggagggataggtaagacaacacttgcaaaagcggtttataatttcattgctggtcaatttga |
28097812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 362 - 498
Target Start/End: Original strand, 29826804 - 29826940
Alignment:
| Q |
362 |
ttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctttctaaattagttgaactggacattaagt |
461 |
Q |
| |
|
||||||||||||||||| | || |||||||||||||| |||| || || ||||| || ||||| ||||| ||| ||||||| |||||| |||| |
|
|
| T |
29826804 |
ttgtgttttcttcatgacttgagagaaagttcagctaaacatggcttagaacatctccaacagaagcttctttccaaaacagttgaattggacactaagc |
29826903 |
T |
|
| Q |
462 |
taggagatgtcaacgagggaattccaatcataaagca |
498 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
29826904 |
taggagatgttaacgaaggaattccaataataaagca |
29826940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 26849290 - 26849378
Alignment:
| Q |
122 |
tatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttgg |
210 |
Q |
| |
|
||||||||| | ||||||| ||| ||||| || |||| || ||||||||||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
26849290 |
tatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttgg |
26849378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 27705816 - 27705749
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgt |
381 |
Q |
| |
|
||||||||||||||| ||||||||| | |||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
27705816 |
acacttgcaagagcaatttataattttgttgctgatcaatttgaaggtttatgttttcttcatgatgt |
27705749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 31288895 - 31288972
Alignment:
| Q |
134 |
tttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttggt |
211 |
Q |
| |
|
|||||||| || ||||| | | |||| || |||||||| || |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
31288895 |
tttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttggt |
31288972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 26623861 - 26623937
Alignment:
| Q |
134 |
tttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttgg |
210 |
Q |
| |
|
|||||||| |||||||||||||| | || ||||||||||||| ||| || ||| |||||||| | ||||||||||| |
|
|
| T |
26623861 |
tttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgg |
26623937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 26729838 - 26729914
Alignment:
| Q |
134 |
tttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttgg |
210 |
Q |
| |
|
|||||||| |||||||||||||| | || ||||||||||||| ||| || ||| |||||||| | ||||||||||| |
|
|
| T |
26729838 |
tttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgg |
26729914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 26056692 - 26056759
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgt |
381 |
Q |
| |
|
|||||||||| |||||||| |||||| || |||||||||||||| | | | |||||||||||| |||| |
|
|
| T |
26056692 |
acacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgt |
26056759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 381
Target Start/End: Original strand, 26076662 - 26076729
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgt |
381 |
Q |
| |
|
|||||||||| |||||||| |||||| || |||||||||||||| | | | |||||||||||| |||| |
|
|
| T |
26076662 |
acacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgt |
26076729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 26959746 - 26959793
Alignment:
| Q |
164 |
aacaagatcaatcatgttcctttatatgttgctgattaccctgttggt |
211 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
26959746 |
aacaagattaaccatgttcctttacatgttgctgattaccttgttggt |
26959793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 26803217 - 26803283
Alignment:
| Q |
315 |
cacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgt |
381 |
Q |
| |
|
|||||||||||||| | ||||||| | |||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
26803217 |
cacttgcaagagcaatctataattttgttgctgatcaatttgaaggtttatgttttcttcatgatgt |
26803283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 27530713 - 27530655
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttct |
372 |
Q |
| |
|
|||||||||| |||| ||||||||| ||| |||||||||||||| | ||| |||||||| |
|
|
| T |
27530713 |
acacttgcaaaagcaatttataatttcattgctgatcaatttgaagttttatgttttct |
27530655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 25483637 - 25483694
Alignment:
| Q |
122 |
tatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatg |
179 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| | || ||||| |||||||||| |
|
|
| T |
25483637 |
tatgaacacaagtttattgagaagatagtccaatacatctccaacaatatcaatcatg |
25483694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 496
Target Start/End: Original strand, 26656876 - 26656917
Alignment:
| Q |
455 |
attaagttaggagatgtcaacgagggaattccaatcataaag |
496 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
26656876 |
attaagttaggagatgttagtgagggaattccaatcataaag |
26656917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 496
Target Start/End: Original strand, 26762847 - 26762888
Alignment:
| Q |
455 |
attaagttaggagatgtcaacgagggaattccaatcataaag |
496 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
26762847 |
attaagttaggagatgttagtgagggaattccaatcataaag |
26762888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 26975572 - 26975617
Alignment:
| Q |
165 |
acaagatcaatcatgttcctttatatgttgctgattaccctgttgg |
210 |
Q |
| |
|
|||||||||| || ||||||||| ||||||||||||||| |||||| |
|
|
| T |
26975572 |
acaagatcaaccacgttcctttacatgttgctgattaccttgttgg |
26975617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 439
Target Start/End: Original strand, 28140305 - 28140430
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagc |
413 |
Q |
| |
|
||||||||| |||| ||||||||| || || ||||||||||| |||||||||||||||| |||| || ||| |||||||||| |||| || || |
|
|
| T |
28140305 |
acacttgcacaagcaatttataattttattgccgatcaatttgaatgtttgtgttttcttcataatgtgagagaaatttcagctaaacatggcttagaag |
28140404 |
T |
|
| Q |
414 |
atctgcagggaaagctcctttctaaa |
439 |
Q |
| |
|
|||| || | ||| |||||||||||| |
|
|
| T |
28140405 |
atctccaagaaaaactcctttctaaa |
28140430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 25539121 - 25539209
Alignment:
| Q |
122 |
tatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttgg |
210 |
Q |
| |
|
|||||| || |||||||||||||||||||| || | | || ||||| |||||||||||| ||||||||| || | ||||||||||| |
|
|
| T |
25539121 |
tatgaatacaagtttattgagaagatagtcgaagacatctccaacaatatcaatcatgtttttttatatgtggccaaataccctgttgg |
25539209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 26849465 - 26849525
Alignment:
| Q |
297 |
gaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttga |
357 |
Q |
| |
|
|||||| |||||| || |||||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
26849465 |
gaggaatgggaaaaacaacacttgctcaagcagtttataattcgattgctgatcaatttga |
26849525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 26937799 - 26937867
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgta |
382 |
Q |
| |
|
||||||||| ||||| ||||||||| || | |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
26937799 |
acacttgcacgagcaatttataatttgattggtgatcaatttgaaagtttgtgttttcttcataatgta |
26937867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 34 - 498
Target Start/End: Complemental strand, 57987 - 57522
Alignment:
| Q |
34 |
tgtatttatacaactattattaataaattgatgtggttgtgaatttgtgatgcatttactcaaacttatttgatt-gtgtaggaatggttatgaacacga |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| ||| | |||||||||| |||||| ||| |
|
|
| T |
57987 |
tgtatttatacaactattattaataaattgacgcggttgtgaatttatgatgcatttactcaaacttatttcatttgggtaggaatggatatgaatgcga |
57888 |
T |
|
| Q |
133 |
gtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaa |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| || ||| |
|
|
| T |
57887 |
gtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgccgattaccctgttggtatcgaatctagggtcctaaaa |
57788 |
T |
|
| Q |
233 |
gtaaattcacttatggattttggatctaatggcgaagttcagatgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagttt |
332 |
Q |
| |
|
|||||||||||| ||||| || |||||||||| ||||||||||||||||||||||| || | |||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
57787 |
gtaaattcacttctggatgttagatctaatggtgaagttcagatgctagggatctacggaattggaggaatgggaaagacaacacttgctagagcagttt |
57688 |
T |
|
| Q |
333 |
ataattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcct |
432 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||| ||||||||||||||||| || || |
|
|
| T |
57687 |
ttaattccatagccgatcaatttgatgatttgtgttttcttcacgacgtaagggaaaattcagctaaatatggtttagagcatctgcagggaaaacttct |
57588 |
T |
|
| Q |
433 |
ttctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataaagca |
498 |
Q |
| |
|
||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
57587 |
ttccaaattagttgaattggacattaagttagtagatgtcaacgagggaattccaatcataaagca |
57522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 34 - 498
Target Start/End: Original strand, 27941 - 28404
Alignment:
| Q |
34 |
tgtatttatacaactattattaataaattgatgtggttgtgaatttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||| |
|
|
| T |
27941 |
tgtatttatacaactattattaataaattgatatgattgtgaatttgtgatgcatttactcaaa-ttatttgattgggtaggaatggctatgaatgcgag |
28039 |
T |
|
| Q |
134 |
tttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaag |
233 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||| || |||| |
|
|
| T |
28040 |
tttatcgagaagatagtcaaatatatatctaacaagatcaatcatgttcctttacatgttgccgattaccctgttggtgttgaatctagggtcctaaaag |
28139 |
T |
|
| Q |
234 |
taaattcacttatggattttggatctaatggcgaagttcagatgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagttta |
333 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| |||||| |||||||||| ||| | | |||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
28140 |
taaattcacttatggatgttggatctaatggtgaagcacagatgatagggatctacgggaatcgtggaatgggaaagacaacacttgcaagggcagttta |
28239 |
T |
|
| Q |
334 |
taattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctt |
433 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||| ||| |||| ||||| |
|
|
| T |
28240 |
taattttatagccgatcaatttgatggtttgtgttttcttcacgatgtaagggaaaattcagctaaatatggtttagagcatctataggtaaagatcctt |
28339 |
T |
|
| Q |
434 |
tctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataaagca |
498 |
Q |
| |
|
|| |||||||||||| |||| |||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
28340 |
tccaaattagttgaattggaagttaagttaggagatgtcaacgagggaattccagtcttaaagca |
28404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 73 - 498
Target Start/End: Original strand, 35258 - 35681
Alignment:
| Q |
73 |
tgaatttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatc |
172 |
Q |
| |
|
||||||||||||||||| || | ||||||||| ||||||||||||| |||||| || ||| |||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
35258 |
tgaatttgtgatgcattaaccaagacttatttg--tgtgtaggaatggatatgaatacaagtatattaagaagatagtcaaatatgtatcaaacaagatc |
35355 |
T |
|
| Q |
173 |
aatcatgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaagtaaattcacttatggattttggatctaatggcgaagttc |
272 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| | |||||||||| || ||||||| |||| | ||||| ||||||||||||| ||||||| |
|
|
| T |
35356 |
aatcatgttcctttatatgttgccgattaccctgttggtctcaagtctagggtcctaaaagtaacttcatgtgtggatgttggatctaatggtgaagttc |
35455 |
T |
|
| Q |
273 |
agatgctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttct |
372 |
Q |
| |
|
|||||||||||||||||||| || | |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35456 |
agatgctagggatctatgggactggtggaattggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgatggtttgtgttttct |
35555 |
T |
|
| Q |
373 |
tcatgatgtaaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtc |
472 |
Q |
| |
|
||| || |||||| ||| |||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||| || |||||||||||||| |
|
|
| T |
35556 |
tcacgacgtaagggaaaattcatctaaatatggtttagagcatctacagggaaagctcctttccaaattagttgaattggacgttgagttaggagatgtc |
35655 |
T |
|
| Q |
473 |
aacgagggaattccaatcataaagca |
498 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
35656 |
aatgagggaattccaatcataaagca |
35681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 81 - 496
Target Start/End: Original strand, 43494 - 43909
Alignment:
| Q |
81 |
tgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgt |
180 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||| |||| | ||| ||||||| ||| |
|
|
| T |
43494 |
tgatgcatttactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagatagtaaaatatttatccagcaaaatcaatcgtgt |
43593 |
T |
|
| Q |
181 |
tcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaagtaaattcacttatggattttggatctaatggcgaagttcagatgcta |
280 |
Q |
| |
|
|||| |||||||||||||||||||||||||| | ||||||||||| || ||||||||| | || | ||| | ||||||| ||| | |||||| |||||| |
|
|
| T |
43594 |
tcctctatatgttgctgattaccctgttggtctcgagtctagggtcctaaaagtaaataaatttcttgatgtcggatctactggtgtagttcatatgcta |
43693 |
T |
|
| Q |
281 |
gggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatg |
380 |
Q |
| |
|
|||||||||||| || | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
43694 |
gggatctatgggactggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatg |
43793 |
T |
|
| Q |
381 |
taaggaaaagttcagctaaatatggtttggagcatctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtcaacgaggg |
480 |
Q |
| |
|
||||| ||| |||| ||||||||||||| |||||||| |||| |||||||||||| |||||||||||| |||||||| |||| |||||| |||||||||| |
|
|
| T |
43794 |
taagggaaaattcaactaaatatggtttagagcatctacaggaaaagctcctttccaaattagttgaattggacattgagttgggagatatcaacgaggg |
43893 |
T |
|
| Q |
481 |
aattccaatcataaag |
496 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
43894 |
aattccaataataaag |
43909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 34 - 221
Target Start/End: Original strand, 117283 - 117470
Alignment:
| Q |
34 |
tgtatttatacaactattattaataaattgatgtggttgtgaatttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgag |
133 |
Q |
| |
|
|||||| ||||||| |||| || | |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
117283 |
tgtattcatacaacagttatcaacacattgatgttattgtgaatttgcgatgcatttactcaaacttatttgattgggtaggaatggctatgaatacgag |
117382 |
T |
|
| Q |
134 |
tttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttgctgattaccctgttggtattgagtcta |
221 |
Q |
| |
|
||||||||||||||||||||||| |||| | ||||||| | |||||||||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
117383 |
tttattgagaagatagtcaaatacgtattcaggaagatcagttgtgttcctttatatgttgcggattaccctgtaggtctcgagtcta |
117470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 78 - 357
Target Start/End: Complemental strand, 5090601 - 5090322
Alignment:
| Q |
78 |
ttgtgatgcatttactcaaacttatttgattgtgtaggaatggttatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatca |
177 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||| ||||| ||| |||||| ||||||||||| ||| |||||||| |||||| || |||||||||||||| |
|
|
| T |
5090601 |
ttgtgatgcatttattcaaatttatctgatttgataggactggatatgaatacgagtttattcagatgatagtcacatatgtctccaacaagatcaatca |
5090502 |
T |
|
| Q |
178 |
tgttcctttatatgttgctgattaccctgttggtattgagtctagggttcttaaagtaaattcacttatggattttggatctaatggcgaagttcagatg |
277 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | ||| || | ||||| ||| || ||||||| ||||| |||| ||||||| |||| || ||| |
|
|
| T |
5090501 |
cactcctttacatgttgctgattacccggttggattagagcctcgtgttctgaaattatattcactactggatattggttctaatgataaagtccaaatg |
5090402 |
T |
|
| Q |
278 |
ctagggatctatgggcctagaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttga |
357 |
Q |
| |
|
||||||||||||||| || |||||| ||| || || ||||||| || |||| |||| |||| ||| ||| |||||||||| |
|
|
| T |
5090401 |
ctagggatctatgggactggaggaatgggtaaaaccacacttggaaaagcaatttacaatttcattgctcatcaatttga |
5090322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 18731104 - 18731053
Alignment:
| Q |
122 |
tatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatca |
173 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
18731104 |
tatgaatacaagtttattgaaaagatagtcaaatatgtctccaacaagatca |
18731053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 95 - 498
Target Start/End: Original strand, 3280210 - 3280613
Alignment:
| Q |
95 |
aaacttatttgattgtgtaggaatggttatgaacacgagtttattgagaagatagtcaaatatgtatctaacaagatcaatcatgttcctttatatgttg |
194 |
Q |
| |
|
|||||||| |||||| | ||||||| ||| || || ||||||| | | | ||||||||| ||||||| |||||||| |||| || ||||||| |||||| |
|
|
| T |
3280210 |
aaacttatatgattgggcaggaatgaatatcaatacaagtttataggggatatagtcaaaaatgtatccaacaagataaatcgtgctcctttacatgttg |
3280309 |
T |
|
| Q |
195 |
ctgattaccctgttggtattgagtctagggttcttaaagtaaattcacttatggattttggatctaatggcgaagttcagatgctagggatctatgggcc |
294 |
Q |
| |
|
|||||||| ||||| || ||||| | || |||||||||||||||||| | || ||| ||||||| ||||| ||||| |||| |||||||| | |
|
|
| T |
3280310 |
tcgattacccggttggcatgcagtctcgagtccttaaagtaaattcacttctagaagttgcatctaattatgaagtcaagatgataggtatctatggact |
3280409 |
T |
|
| Q |
295 |
tagaggaaagggaaagacgacacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttca |
394 |
Q |
| |
|
| |||||| ||| ||||| || |||||||||||||||||||||| ||| ||| |||||||||| | | ||||||||||| |||| || ||| |||| |
|
|
| T |
3280410 |
tggaggaatgggtaagacaactcttgcaagagcagtttataatttcattgctaatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattca |
3280509 |
T |
|
| Q |
395 |
gctaaatatggtttggagcatctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataa |
494 |
Q |
| |
|
|| ||| ||||| | |||||||| || | | ||||| ||| |||| | |||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
3280510 |
gcaaaacatggtctagagcatctccaaaaggattttctttccaaaactgttggattggacattaagttaggagatagtagtgagggaattccaatcataa |
3280609 |
T |
|
| Q |
495 |
agca |
498 |
Q |
| |
|
|||| |
|
|
| T |
3280610 |
agca |
3280613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 495
Target Start/End: Complemental strand, 28127087 - 28126906
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagc |
413 |
Q |
| |
|
|||||||||| |||| ||||||||| ||| |||||||||||||| | ||| |||||||| | ||||| || | | |||| || |||| |||| | | |
|
|
| T |
28127087 |
acacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttctagaagatgtgagagagatttcaactccatataatttgaaac |
28126988 |
T |
|
| Q |
414 |
atctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataaa |
495 |
Q |
| |
|
|||| || | ||||||||||| ||| ||||| | |||||||||||||||||| ||| | ||||||||| |||||||||| |
|
|
| T |
28126987 |
atctccaagaaaagctccttttgaaaacagttggattggacattaagttaggaggtgttagtgagggaattgcaatcataaa |
28126906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 28163787 - 28163729
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttct |
372 |
Q |
| |
|
|||||||||| |||| ||||||||| ||| |||||||||||||| | ||| |||||||| |
|
|
| T |
28163787 |
acacttgcaaaagcaatttataatttcattgctgatcaatttgaaggtttatgttttct |
28163729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 267749 - 267668
Alignment:
| Q |
317 |
cttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagcta |
398 |
Q |
| |
|
|||||||||||| | ||||||| || |||||||||||||| | || ||||||||||||||||| || ||| |||||||| |
|
|
| T |
267749 |
cttgcaagagcaatctataattttattgctgatcaatttgaaggattatgttttcttcatgatgtgagagaaaattcagcta |
267668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 495
Target Start/End: Original strand, 16691637 - 16691818
Alignment:
| Q |
314 |
acacttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgtaaggaaaagttcagctaaatatggtttggagc |
413 |
Q |
| |
|
|||||||| ||||| ||||||||| || |||||||||||||| |||||||||||||||||| || || ||| |||| ||||| |||| || || | |
|
|
| T |
16691637 |
acacttgctcgagcaatttataatttgattgctgatcaatttgaatgtttgtgttttcttcatgacgtgagagaaaattcatctaaacatggcttagaac |
16691736 |
T |
|
| Q |
414 |
atctgcagggaaagctcctttctaaattagttgaactggacattaagttaggagatgtcaacgagggaattccaatcataaa |
495 |
Q |
| |
|
|||| || | || ||||||||| ||| ||| | | ||||||||||||||| |||| | || ||||||||||| ||||| |
|
|
| T |
16691737 |
atcttcaagaaaggctcctttccaaaaccattggattagacattaagttaggacatgttagtgaaggaattccaataataaa |
16691818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 16691423 - 16691463
Alignment:
| Q |
100 |
tatttgattgtgtaggaatggttatgaacacgagtttattg |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16691423 |
tatttgattgtgtaggaatgaatatgaacacgagtttattg |
16691463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 381
Target Start/End: Complemental strand, 29273247 - 29273183
Alignment:
| Q |
317 |
cttgcaagagcagtttataattccatagctgatcaatttgatgatttgtgttttcttcatgatgt |
381 |
Q |
| |
|
|||||||||||| | ||||||| | |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
29273247 |
cttgcaagagcaatctataatttttttgctgatcaatttgaagatttatgttttcttcatgatgt |
29273183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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