View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20302_low_5 (Length: 398)

Name: NF20302_low_5
Description: NF20302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20302_low_5
NF20302_low_5
[»] chr7 (17 HSPs)
chr7 (139-391)||(15489627-15489878)
chr7 (139-391)||(15557668-15557919)
chr7 (205-391)||(15431232-15431418)
chr7 (139-302)||(15450827-15450990)
chr7 (145-332)||(16944265-16944452)
chr7 (145-301)||(15431419-15431575)
chr7 (1-143)||(15431970-15432112)
chr7 (1-143)||(15490325-15490467)
chr7 (318-391)||(15450692-15450765)
chr7 (198-300)||(15534703-15534805)
chr7 (93-143)||(16944977-16945027)
chr7 (204-300)||(15480846-15480942)
chr7 (198-300)||(15427852-15427954)
chr7 (198-300)||(15483762-15483864)
chr7 (198-268)||(15447384-15447454)
chr7 (56-89)||(15558510-15558543)
chr7 (343-378)||(15450790-15450825)
[»] scaffold1195 (1 HSPs)
scaffold1195 (56-89)||(1160-1193)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 139 - 391
Target Start/End: Complemental strand, 15489878 - 15489627
Alignment:
Q  139 attttacaatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccat 238  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  15489878 attttacaatattgatttcaatattgaatgaactcatgcataatattcatataacaatcagttaatacaatgttctcattctagtgcataattcatccat 15489779  T
Q  239 tttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctcttttgtgctctatctgcaat 338  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||    
T  15489778 tttcattatttgaccttactaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaatttcctcgc-tttgtgctctatcttcaat 15489680  T
Q  339 ttttcatgataatgatgtttctatcgcactcccccattcagcttttcatctca 391  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15489679 ttttcatgataatgatgtttctatcgcgctcccccattcagcttttcatctca 15489627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 139 - 391
Target Start/End: Complemental strand, 15557919 - 15557668
Alignment:
Q  139 attttacaatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccat 238  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  15557919 attttacaatattgatttcaatattgaatgaactcatgcataatattcatataacaatcagttaatacaatgttctcattctagtgcataattcatccat 15557820  T
Q  239 tttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctcttttgtgctctatctgcaat 338  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||    
T  15557819 tttcattatttgaccttactaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaatttcctcgc-tttgtgctctatcttcaat 15557721  T
Q  339 ttttcatgataatgatgtttctatcgcactcccccattcagcttttcatctca 391  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15557720 ttttcatgataatgatgtttctatcgcgctcccccattcagcttttcatctca 15557668  T

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Target: chr7; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 205 - 391
Target Start/End: Complemental strand, 15431418 - 15431232
Alignment:
Q  205 acaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattctta 304  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15431418 acaatgttctcattcttgtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattctta 15431319  T
Q  305 ttaaaattcctctcttttgtgctctatctgcaatttttcatgataatgatgtttctatcgcactcccccattcagcttttcatctca 391  Q
      ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  15431318 agaaatttcctctcttttgtgctctatctgcaatttttcatgataatgatgtttctatcgcgctcccccattcagcttttaatctca 15431232  T

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Target: chr7; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 139 - 302
Target Start/End: Complemental strand, 15450990 - 15450827
Alignment:
Q  139 attttacaatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccat 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||    
T  15450990 attttacaatattgatttcaatactgaatgaactcatgcataatattcatataacaatcagttaatataatgttctcattccagtgcataattcatccat 15450891  T
Q  239 tttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattct 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15450890 tttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattct 15450827  T

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Target: chr7; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 145 - 332
Target Start/End: Complemental strand, 16944452 - 16944265
Alignment:
Q  145 caatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccattttcat 244  Q
    |||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||||    
T  16944452 caattttgatttcaatacttaatgaactcatgcataatattcatataacaatcagttagtacaatgttctcattctagtacacaattcatccattttcat 16944353  T
Q  245 tatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattcttattaaaattcctctcttttgtgctctatc 332  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||||||||    
T  16944352 tatttgaccttattaattgagagtttttctaaaatctgtattttcttctgcaaattcttattaaatttcctcgcttttgtgctctatc 16944265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 145 - 301
Target Start/End: Complemental strand, 15431575 - 15431419
Alignment:
Q  145 caatattgatttcaatactgaatgaactcatgcataatattcatattacaattagttaatacaatgttctcattctagtgcataattcatccattttcat 244  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||| |||||||||||||||||||||||    
T  15431575 caatatttattacaatactgaatgaactcatgcataatattcatataacaaaacgttaatacaatgttctcattcttgtgcataattcatccattttcat 15431476  T
Q  245 tatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15431475 tatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaattc 15431419  T

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Target: chr7; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 15432112 - 15431970
Alignment:
Q  1 ctatagccgctatttcgtaatactttgtgctaaataaggcatcgcaaaaaaccagtgatttgtgtaaattctgcaatgcaatggtgacacgacgctacaa 100  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||||||||||||||||||| |||| |||    
T  15432112 ctatagccgctatttcgtaatactttgtgctaaataaagtatcgcaaaaaaacaatgatttgtgtaaattctgcaatgcaatggtgacacgccgctgcaa 15432013  T
Q  101 ctactatttattatttaacaatactcaggtatcatctgatttt 143  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  15432012 ctactatttattatttaacaatattcaggtatcatctgatttt 15431970  T

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Target: chr7; HSP #8
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 15490467 - 15490325
Alignment:
Q  1 ctatagccgctatttcgtaatactttgtgctaaataaggcatcgcaaaaaaccagtgatttgtgtaaattctgcaatgcaatggtgacacgacgctacaa 100  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||||||||| ||||||||||||||||| |||||||     
T  15490467 ctatagccgctatttcgtaatactttgtgctaaataaagtatcgcaaaaaaacaatgatttgtgtaaattctggaatgcaatggtgacacgccgctacag 15490368  T
Q  101 ctactatttattatttaacaatactcaggtatcatctgatttt 143  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  15490367 ctactatttattatttaacaatactcaggtattatctgatttt 15490325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 318 - 391
Target Start/End: Complemental strand, 15450765 - 15450692
Alignment:
Q  318 cttttgtgctctatctgcaatttttcatgataatgatgtttctatcgcactcccccattcagcttttcatctca 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  15450765 cttttgtgctctatctgcaatttttcatgataatgatgtttctatcgcgctcccctattcagcttttcatctca 15450692  T

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Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 15534805 - 15534703
Alignment:
Q  198 agttaatacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaa 297  Q
    ||||| |||||||||||||||| |||||||||| | ||||||||||| ||| |||||| ||||||||||||||| ||| ||| ||| |||||||| ||||    
T  15534805 agttactacaatgttctcattcaagtgcataatccgtccattttcatcattcgaccttgttaattgagagttttcctaaaatttgtgttttcttctgcaa 15534706  T
Q  298 att 300  Q
    |||    
T  15534705 att 15534703  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 16945027 - 16944977
Alignment:
Q  93 cgctacaactactatttattatttaacaatactcaggtatcatctgatttt 143  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16945027 cgctacaactagtatttattatttaacaatactcaggtatcatctgatttt 16944977  T

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Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 15480846 - 15480942
Alignment:
Q  204 tacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaaatt 300  Q
    |||||||||||||||  |||||||||| ||||||||||||| ||| |||||  ||||||||||||||| ||| | | |||||||||||  |||||||    
T  15480846 tacaatgttctcatttaagtgcataatccatccattttcatcattcgacctcgttaattgagagttttcctaaattttgtattttcttttgcaaatt 15480942  T

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Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 15427954 - 15427852
Alignment:
Q  198 agttaatacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaa 297  Q
    ||||| |||||||||||||||| |||||||||| | ||||||||||| ||| |||||  ||||||||||||||| ||| ||| | | |||||||  ||||    
T  15427954 agttactacaatgttctcattcaagtgcataatccgtccattttcatcattggacctcgttaattgagagttttcctaaaatttctgttttcttatgcaa 15427855  T
Q  298 att 300  Q
    |||    
T  15427854 att 15427852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 300
Target Start/End: Complemental strand, 15483864 - 15483762
Alignment:
Q  198 agttaatacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagtttttctacaatctgtattttcttccgcaa 297  Q
    ||||| ||||||||| |||||| |||||||||| | ||||||||||| |||||||||  ||||||||||||||| ||| ||| | | |||||||  ||||    
T  15483864 agttactacaatgttttcattcaagtgcataatccgtccattttcatcatttgacctcgttaattgagagttttcctaaaatttctgttttcttatgcaa 15483765  T
Q  298 att 300  Q
    |||    
T  15483764 att 15483762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 15447454 - 15447384
Alignment:
Q  198 agttaatacaatgttctcattctagtgcataattcatccattttcattatttgaccttattaattgagagt 268  Q
    ||||| |||||||||||||||| |||||||||| | ||||||||||| ||| |||||  ||||||||||||    
T  15447454 agttactacaatgttctcattcaagtgcataatccgtccattttcatcattcgacctcgttaattgagagt 15447384  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 15558543 - 15558510
Alignment:
Q  56 tgatttgtgtaaattctgcaatgcaatggtgaca 89  Q
    ||||||||||||||||||||||||||||||||||    
T  15558543 tgatttgtgtaaattctgcaatgcaatggtgaca 15558510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 15450825 - 15450790
Alignment:
Q  343 catgataatgatgtttctatcgcactcccccattca 378  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15450825 catgataatgatgtttctatcgcgctcccccattca 15450790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1195 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 1193 - 1160
Alignment:
Q  56 tgatttgtgtaaattctgcaatgcaatggtgaca 89  Q
    |||||||||||||| |||||||||||||||||||    
T  1193 tgatttgtgtaaatactgcaatgcaatggtgaca 1160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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