View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20302_low_6 (Length: 368)

Name: NF20302_low_6
Description: NF20302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20302_low_6
NF20302_low_6
[»] chr4 (2 HSPs)
chr4 (114-356)||(6662048-6662300)
chr4 (11-129)||(6662490-6662607)
[»] chr5 (2 HSPs)
chr5 (287-356)||(26708201-26708270)
chr5 (287-356)||(26977935-26978004)
[»] chr2 (2 HSPs)
chr2 (318-354)||(10945639-10945675)
chr2 (318-354)||(10939770-10939806)
[»] chr6 (1 HSPs)
chr6 (318-354)||(24043299-24043335)
[»] chr1 (1 HSPs)
chr1 (318-354)||(49389252-49389288)
[»] chr7 (2 HSPs)
chr7 (209-256)||(31208365-31208412)
chr7 (322-354)||(13817476-13817508)
[»] chr3 (1 HSPs)
chr3 (317-345)||(14656377-14656405)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 114 - 356
Target Start/End: Complemental strand, 6662300 - 6662048
Alignment:
Q  114 tatatattaaattgatatgttcactttaattctgtttgaatatattttgttgtggggtatataatacgcactttgtga----------tgtatattaata 203  Q
    |||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||          ||||||||||||    
T  6662300 tataaattaaattgatatgctcactttaattttgtttgaatatcttttgttgtggggaatataatacgcactttgagaatcttgtgtttgtatattaata 6662201  T
Q  204 catagtttgagcatgtttattttattgtaaaatattatttaattatatcattgacaacaaaactgagaaactcatagagttacatgcgttagtgaaacaa 303  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||  ||||||| || ||||||||||||    
T  6662200 catagtttgagtatgtttattttattgtgaaatattatttaattatattattgataacaaaattgagaaactcatgaagttacaagcattagtgaaacaa 6662101  T
Q  304 gtgtaattaaaacgttgtcgcttagaaataatctaagtagacctgaatatatt 356  Q
    |||||||||| | ||||||| ||||||||||| ||||||||||||||||||||    
T  6662100 gtgtaattaagatgttgtcgtttagaaataatataagtagacctgaatatatt 6662048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 6662607 - 6662490
Alignment:
Q  11 agtgatataaatttgattcagaatgtgtacaggtttgatatgcttgttaactaannnnnnnnngtgaccctatatttaaaatataaaacttgaattctgt 110  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||||| |          ||||||||||| |||||||||||||||||||| |||    
T  6662607 agtgatataaattctaatcagaatgtgtacaggtttgatatgcttgttaactgaatattttta-tgaccctatatataaaatataaaacttgaattttgt 6662509  T
Q  111 gggtatatattaaattgat 129  Q
    ||||||| |||||||||||    
T  6662508 gggtataaattaaattgat 6662490  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 26708270 - 26708201
Alignment:
Q  287 atgcgttagtgaaacaagtgtaattaaaacgttgtcgcttagaaataatctaagtagacctgaatatatt 356  Q
    |||| ||||| ||||||||||||   | | |||||||||||||||||||||||||||| |||||||||||    
T  26708270 atgcattagtaaaacaagtgtaagagagatgttgtcgcttagaaataatctaagtagatctgaatatatt 26708201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 26978004 - 26977935
Alignment:
Q  287 atgcgttagtgaaacaagtgtaattaaaacgttgtcgcttagaaataatctaagtagacctgaatatatt 356  Q
    |||| ||||| ||||||||||||   | | |||||||||||||||||||||||||||| |||||||||||    
T  26978004 atgcattagtaaaacaagtgtaagagagatgttgtcgcttagaaataatctaagtagatctgaatatatt 26977935  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 10945675 - 10945639
Alignment:
Q  318 ttgtcgcttagaaataatctaagtagacctgaatata 354  Q
    |||||||||||||||||||||||||||||||||||||    
T  10945675 ttgtcgcttagaaataatctaagtagacctgaatata 10945639  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 10939806 - 10939770
Alignment:
Q  318 ttgtcgcttagaaataatctaagtagacctgaatata 354  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10939806 ttgtcgcttagaaataatctaagtagatctgaatata 10939770  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 24043335 - 24043299
Alignment:
Q  318 ttgtcgcttagaaataatctaagtagacctgaatata 354  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24043335 ttgtcgcttagaaataatctaagtagatctgaatata 24043299  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 49389288 - 49389252
Alignment:
Q  318 ttgtcgcttagaaataatctaagtagacctgaatata 354  Q
    |||||||||||||||||||||||||||| ||||||||    
T  49389288 ttgtcgcttagaaataatctaagtagacttgaatata 49389252  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 31208412 - 31208365
Alignment:
Q  209 tttgagcatgtttattttattgtaaaatattatttaattatatcattg 256  Q
    |||||| || ||||||||||||| ||||||||||||||||||| ||||    
T  31208412 tttgagaatttttattttattgtgaaatattatttaattatattattg 31208365  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 354
Target Start/End: Original strand, 13817476 - 13817508
Alignment:
Q  322 cgcttagaaataatctaagtagacctgaatata 354  Q
    ||||||||||||||||||||||| |||||||||    
T  13817476 cgcttagaaataatctaagtagatctgaatata 13817508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 14656377 - 14656405
Alignment:
Q  317 gttgtcgcttagaaataatctaagtagac 345  Q
    |||||||||||||||||||||||||||||    
T  14656377 gttgtcgcttagaaataatctaagtagac 14656405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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