View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20302_low_9 (Length: 241)

Name: NF20302_low_9
Description: NF20302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20302_low_9
NF20302_low_9
[»] chr4 (8 HSPs)
chr4 (3-220)||(52734708-52734925)
chr4 (73-125)||(17822883-17822935)
chr4 (179-214)||(8422988-8423023)
chr4 (177-214)||(35684277-35684314)
chr4 (107-169)||(55437345-55437409)
chr4 (73-125)||(21157768-21157820)
chr4 (73-125)||(26747420-26747472)
chr4 (73-125)||(28615334-28615386)
[»] chr5 (6 HSPs)
chr5 (168-214)||(16945123-16945169)
chr5 (72-125)||(32172653-32172706)
chr5 (69-125)||(2568658-2568714)
chr5 (88-143)||(32197702-32197757)
chr5 (102-169)||(10771935-10772003)
chr5 (178-214)||(12521450-12521486)
[»] chr2 (9 HSPs)
chr2 (71-169)||(40837451-40837553)
chr2 (71-125)||(11513898-11513952)
chr2 (71-127)||(13737002-13737058)
chr2 (179-214)||(9477863-9477898)
chr2 (166-216)||(3101190-3101240)
chr2 (71-125)||(43985019-43985073)
chr2 (186-214)||(5133655-5133683)
chr2 (178-214)||(43203012-43203048)
chr2 (93-125)||(44590034-44590066)
[»] chr8 (6 HSPs)
chr8 (102-143)||(5383133-5383174)
chr8 (167-214)||(12496562-12496609)
chr8 (71-116)||(36643909-36643954)
chr8 (167-211)||(6950223-6950267)
chr8 (71-123)||(38874648-38874700)
chr8 (73-125)||(39561559-39561611)
[»] chr7 (6 HSPs)
chr7 (178-214)||(753354-753390)
chr7 (73-143)||(18749835-18749905)
chr7 (69-125)||(2825245-2825301)
chr7 (73-125)||(12110360-12110412)
chr7 (73-125)||(12792642-12792694)
chr7 (73-125)||(40439054-40439106)
[»] chr6 (3 HSPs)
chr6 (179-214)||(33068712-33068747)
chr6 (178-211)||(32408833-32408866)
chr6 (99-143)||(2034490-2034534)
[»] chr3 (6 HSPs)
chr3 (168-214)||(28289261-28289307)
chr3 (73-126)||(36887503-36887556)
chr3 (73-125)||(21367667-21367719)
chr3 (73-125)||(25776117-25776169)
chr3 (178-214)||(43116578-43116614)
chr3 (73-125)||(53789479-53789531)
[»] chr1 (12 HSPs)
chr1 (88-130)||(26779958-26780000)
chr1 (104-146)||(44251515-44251557)
chr1 (64-130)||(49175614-49175680)
chr1 (69-125)||(7137012-7137068)
chr1 (85-125)||(8130436-8130476)
chr1 (178-214)||(12519120-12519156)
chr1 (73-125)||(12564517-12564569)
chr1 (178-214)||(24263289-24263325)
chr1 (73-125)||(27887136-27887188)
chr1 (73-125)||(34290236-34290288)
chr1 (93-125)||(37842393-37842425)
chr1 (89-125)||(38219913-38219949)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 52734925 - 52734708
Alignment:
Q  3 tatggacataagtttgttgtttcacttgttagactgtttgagagagattataacatgcctatatctgttatttttagcttagttccatatgttcttcatg 102  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52734925 tatggacataagtttgttgtttcacttgtgagactgtttgagagagattataacatgcctatatctgttatttttagcttagttccatatgttcttcatg 52734826  T
Q  103 atagcttatgaaaacaacttatatgaaagtaatttgacttttttgttttgttatagatatagcttatgataaggttttatgctataaacacttaattaag 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52734825 atagcttatgaaaacaacttatatgaaagtaatttgacttttttgttttgttatagatatagcttatgataaggttttatgctataaacacttaattaag 52734726  T
Q  203 ctgtttatccaatccagg 220  Q
    ||||||||||||||||||    
T  52734725 ctgtttatccaatccagg 52734708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 17822883 - 17822935
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    ||||||||||| || |||| ||||| || ||||||||||||||||||||||||    
T  17822883 tttttagcttattttcataagttctccaagatagcttatgaaaacaacttata 17822935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 8422988 - 8423023
Alignment:
Q  179 ttatgctataaacacttaattaagctgtttatccaa 214  Q
    |||||||||||||||||||||||| |||||||||||    
T  8422988 ttatgctataaacacttaattaagttgtttatccaa 8423023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 35684277 - 35684314
Alignment:
Q  177 ttttatgctataaacacttaattaagctgtttatccaa 214  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  35684277 ttttatgctatatacacttaattaagctgattatccaa 35684314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 55437345 - 55437409
Alignment:
Q  107 cttatgaaaacaacttatatgaaagtaatttgactt--ttttgttttgttatagatatagcttat 169  Q
    |||||||||| | ||||||||||| |||||||||||  |||| | |||||||||| |||||||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttat 55437409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 21157820 - 21157768
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    ||||||||||| ||||||| | |||||| |||||| |||||||||| ||||||    
T  21157820 tttttagcttatttccataagctcttcaggatagcatatgaaaacatcttata 21157768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 26747420 - 26747472
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    ||||||||||| ||||||| |||||| | |||| || ||||||||||||||||    
T  26747420 tttttagcttatttccataagttctttaggataactaatgaaaacaacttata 26747472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 28615386 - 28615334
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    ||||| ||||| || |||| | ||||||| |||||||||||||||||||||||    
T  28615386 tttttggcttattttcataagctcttcattatagcttatgaaaacaacttata 28615334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 16945123 - 16945169
Alignment:
Q  168 atgataaggttttatgctataaacacttaattaagctgtttatccaa 214  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||    
T  16945123 atgataagcttttatgctataaacacttaattaggctgtttatccaa 16945169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 32172706 - 32172653
Alignment:
Q  72 atttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    ||||| |||||| ||||||  |||||||||||||||||||||||||| ||||||    
T  32172706 attttcagcttatttccattagttcttcatgatagcttatgaaaacagcttata 32172653  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 2568714 - 2568658
Alignment:
Q  69 gttatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    ||||||||||||||| || |||  | ||| |||||||||||||||||||||||||||    
T  2568714 gttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttata 2568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 32197757 - 32197702
Alignment:
Q  88 catatgttcttcatgatagcttatgaaaacaacttatatgaaagtaatttgacttt 143  Q
    |||| |||||||| ||||||||||| ||||| ||||||||||| || |||||||||    
T  32197757 cataagttcttcaggatagcttatggaaacagcttatatgaaaatagtttgacttt 32197702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 10771935 - 10772003
Alignment:
Q  102 gatagcttatgaaaacaacttatatgaaagtaatttgacttt-tttgttttgttatagatatagcttat 169  Q
    |||||||||||||| ||||||||||||||  ||||| |||||   | |||||||||||| |||||||||    
T  10771935 gatagcttatgaaagcaacttatatgaaaacaatttaactttacattttttgttatagaaatagcttat 10772003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 12521486 - 12521450
Alignment:
Q  178 tttatgctataaacacttaattaagctgtttatccaa 214  Q
    ||||||||| || ||||||||||||||||||||||||    
T  12521486 tttatgctaaaagcacttaattaagctgtttatccaa 12521450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 40837451 - 40837553
Alignment:
Q  71 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatatgaaagtaatttgacttt----tttgttttgttatagatatagct 166  Q
    |||||| |||||| ||||||| | ||| ||||||||||||| |||||||| |||||||||  |||||||||||    | | |||||||||||| ||||||    
T  40837451 tattttcagcttatttccataagctctacatgatagcttattaaaacaacatatatgaaaacaatttgactttaatttatcttttgttatagaaatagct 40837550  T
Q  167 tat 169  Q
    |||    
T  40837551 tat 40837553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 11513952 - 11513898
Alignment:
Q  71 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||||| |||||| ||||| | ||||| |||||||||||||||||||||||||||    
T  11513952 tattttcagcttatttccaaaagttctccatgatagcttatgaaaacaacttata 11513898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 13737058 - 13737002
Alignment:
Q  71 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatatg 127  Q
    ||||||||||||| || |||| ||||| | |||||||||||||||| ||||||||||    
T  13737058 tatttttagcttattttcataagttctccgtgatagcttatgaaaaaaacttatatg 13737002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 9477898 - 9477863
Alignment:
Q  179 ttatgctataaacacttaattaagctgtttatccaa 214  Q
    |||||||||||||||||||||||| |||||||||||    
T  9477898 ttatgctataaacacttaattaagttgtttatccaa 9477863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 3101190 - 3101240
Alignment:
Q  166 ttatgataaggttttatgctataaacacttaattaagctgtttatccaatc 216  Q
    ||||||||||  ||||||||||||  |||||||||||||| ||||||||||    
T  3101190 ttatgataagcatttatgctataaggacttaattaagctgcttatccaatc 3101240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 43985019 - 43985073
Alignment:
Q  71 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||||| |||||| || |||| | |||||| ||||||||||||||||||||||||    
T  43985019 tattttcagcttattttcataagctcttcaagatagcttatgaaaacaacttata 43985073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 5133683 - 5133655
Alignment:
Q  186 ataaacacttaattaagctgtttatccaa 214  Q
    |||||||||||||||||||||||||||||    
T  5133683 ataaacacttaattaagctgtttatccaa 5133655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 43203048 - 43203012
Alignment:
Q  178 tttatgctataaacacttaattaagctgtttatccaa 214  Q
    ||||||||||||||||||||||||| | |||||||||    
T  43203048 tttatgctataaacacttaattaagatatttatccaa 43203012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 44590066 - 44590034
Alignment:
Q  93 gttcttcatgatagcttatgaaaacaacttata 125  Q
    |||||||| ||||||||||||||||||||||||    
T  44590066 gttcttcaagatagcttatgaaaacaacttata 44590034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 5383174 - 5383133
Alignment:
Q  102 gatagcttatgaaaacaacttatatgaaagtaatttgacttt 143  Q
    |||||||||||||||||||||||||||||  |||||||||||    
T  5383174 gatagcttatgaaaacaacttatatgaaaacaatttgacttt 5383133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 12496609 - 12496562
Alignment:
Q  167 tatgataaggttttatgctataaacacttaattaagctgtttatccaa 214  Q
    |||||||||  || ||||||||||||||||||||||||| ||||||||    
T  12496609 tatgataagcgttaatgctataaacacttaattaagctggttatccaa 12496562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 36643909 - 36643954
Alignment:
Q  71 tatttttagcttagttccatatgttcttcatgatagcttatgaaaa 116  Q
    |||||| |||||| ||||||| ||||| ||||||||||||||||||    
T  36643909 tattttcagcttatttccatacgttctccatgatagcttatgaaaa 36643954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 6950267 - 6950223
Alignment:
Q  167 tatgataaggttttatgctataaacacttaattaagctgtttatc 211  Q
    |||||||||  |||||||||||| |||||||||||| ||||||||    
T  6950267 tatgataagcgtttatgctataagcacttaattaagttgtttatc 6950223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 38874700 - 38874648
Alignment:
Q  71 tatttttagcttagttccatatgttcttcatgatagcttatgaaaacaactta 123  Q
    ||||||||||||| || |||||||||| ||  |||||||||||||||| ||||    
T  38874700 tatttttagcttattttcatatgttctccaaaatagcttatgaaaacagctta 38874648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 39561559 - 39561611
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||| |||||| ||||||| | | |||||||||||||| ||||||||||||||    
T  39561559 ttttcagcttatttccataagcttttcatgatagcttacgaaaacaacttata 39561611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 753354 - 753390
Alignment:
Q  178 tttatgctataaacacttaattaagctgtttatccaa 214  Q
    ||||||||||||||||||||||||| |||||||||||    
T  753354 tttatgctataaacacttaattaagttgtttatccaa 753390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 18749835 - 18749905
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatatgaaagtaatttgacttt 143  Q
    |||| |||||| ||||||| ||| | | |||||||||||||||||| ||||||| ||| || |||||||||    
T  18749835 ttttcagcttatttccataagttttccgtgatagcttatgaaaacagcttatataaaaatagtttgacttt 18749905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 2825245 - 2825301
Alignment:
Q  69 gttatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||||||| |||||| ||||||| |||||  | |||||||| |||||||||||||||    
T  2825245 gttattttcagcttatttccataagttctctaggatagcttgtgaaaacaacttata 2825301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 12110412 - 12110360
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    ||||||| ||| || |||| |||||||| ||||||||||||||||| ||||||    
T  12110412 tttttagattattttcataagttcttcaagatagcttatgaaaacagcttata 12110360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 12792642 - 12792694
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||| |||||| ||||||||| |||||| ||||||||||||||| | ||||||    
T  12792642 ttttcagcttatttccatatgctcttcaagatagcttatgaaaatagcttata 12792694  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 40439106 - 40439054
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||||| |||| ||||||| | |||||| ||||||| ||||||||||||||||    
T  40439106 tttttaacttatttccataagctcttcaggatagctaatgaaaacaacttata 40439054  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 33068712 - 33068747
Alignment:
Q  179 ttatgctataaacacttaattaagctgtttatccaa 214  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33068712 ttatgctataaacacttaattaagctgttcatccaa 33068747  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 32408866 - 32408833
Alignment:
Q  178 tttatgctataaacacttaattaagctgtttatc 211  Q
    ||||||||||||||||||||||||| ||||||||    
T  32408866 tttatgctataaacacttaattaagttgtttatc 32408833  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 2034490 - 2034534
Alignment:
Q  99 catgatagcttatgaaaacaacttatatgaaagtaatttgacttt 143  Q
    |||| ||||||||||||| | |||||||||||||| |||||||||    
T  2034490 catgttagcttatgaaaaaagcttatatgaaagtagtttgacttt 2034534  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 28289261 - 28289307
Alignment:
Q  168 atgataaggttttatgctataaacacttaattaagctgtttatccaa 214  Q
    ||||||||  ||||||||| |||||||||||||| ||||||||||||    
T  28289261 atgataagtgtttatgctaaaaacacttaattaaactgtttatccaa 28289307  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 36887556 - 36887503
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatat 126  Q
    |||| |||||| || |||| |||||||| ||| |||||||||||||||||||||    
T  36887556 ttttcagcttattttcataagttcttcaagatggcttatgaaaacaacttatat 36887503  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 21367719 - 21367667
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||| |||||| || |||| ||||| || ||||||||||||||||||||||||    
T  21367719 ttttcagcttattttcataagttctccaagatagcttatgaaaacaacttata 21367667  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 25776169 - 25776117
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||| |||||| ||||||| |||||||| || | |||||||||||||||||||    
T  25776169 ttttcagcttacttccataagttcttcaagacaacttatgaaaacaacttata 25776117  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 43116578 - 43116614
Alignment:
Q  178 tttatgctataaacacttaattaagctgtttatccaa 214  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  43116578 tttatgctataaacactaaattaagttgtttatccaa 43116614  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 53789479 - 53789531
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||| |||||| || |||| ||||| ||||||||||||||| |||||||||||    
T  53789479 ttttcagcttaatttcataagttctccatgatagcttatgataacaacttata 53789531  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 26779958 - 26780000
Alignment:
Q  88 catatgttcttcatgatagcttatgaaaacaacttatatgaaa 130  Q
    |||| |||||||| |||||||||||||||||||||||| ||||    
T  26779958 cataagttcttcaagatagcttatgaaaacaacttataggaaa 26780000  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 44251557 - 44251515
Alignment:
Q  104 tagcttatgaaaacaacttatatgaaagtaatttgactttttt 146  Q
    ||||||||||||||||||||||| ||| | |||||||||||||    
T  44251557 tagcttatgaaaacaacttatataaaaatcatttgactttttt 44251515  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 49175680 - 49175614
Alignment:
Q  64 tatctgttatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttatatgaaa 130  Q
    |||| ||| |||| |||||| ||||||| ||||| ||||||||||| || ||| |||||||||||||    
T  49175680 tatcagttgttttcagcttatttccataagttctacatgatagcttgtgcaaataacttatatgaaa 49175614  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 7137012 - 7137068
Alignment:
Q  69 gttatttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||||||| |||||| || |||| ||||| || ||||||||||||||||| ||||||    
T  7137012 gttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 8130476 - 8130436
Alignment:
Q  85 ttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    ||||||| ||| | |||||||||||||||||||||||||||    
T  8130476 ttccataagttttccatgatagcttatgaaaacaacttata 8130436  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 12519120 - 12519156
Alignment:
Q  178 tttatgctataaacacttaattaagctgtttatccaa 214  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  12519120 tttatgctataaacacttagttaagttgtttatccaa 12519156  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 12564517 - 12564569
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||| |||||| ||||||| ||||| || ||||||||||||||||||| ||||    
T  12564517 ttttcagcttatttccataagttctccaagatagcttatgaaaacaacctata 12564569  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 24263289 - 24263325
Alignment:
Q  178 tttatgctataaacacttaattaagctgtttatccaa 214  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  24263289 tttatgctataagcacttaattaaactgtttatccaa 24263325  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 27887136 - 27887188
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    ||||||||||| ||  ||||| ||| |||||||| ||||||||||||||||||    
T  27887136 tttttagcttatttttatatgctctccatgatagtttatgaaaacaacttata 27887188  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 34290288 - 34290236
Alignment:
Q  73 tttttagcttagttccatatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||| |||||| || |||| |||||||| ||||||||||||||||| ||||||    
T  34290288 ttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttata 34290236  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 37842393 - 37842425
Alignment:
Q  93 gttcttcatgatagcttatgaaaacaacttata 125  Q
    |||||||| ||||||||||||||||||||||||    
T  37842393 gttcttcaagatagcttatgaaaacaacttata 37842425  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 38219949 - 38219913
Alignment:
Q  89 atatgttcttcatgatagcttatgaaaacaacttata 125  Q
    |||||||||||| || |||||||||||||||||||||    
T  38219949 atatgttcttcaagagagcttatgaaaacaacttata 38219913  T

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