View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20303_high_1 (Length: 410)
Name: NF20303_high_1
Description: NF20303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20303_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 5628593 - 5628769
Alignment:
| Q |
17 |
agacagagtagcaaatctcacgttgtgggataagacttgacagcggttgttgttcttataaatttaacttttcttcgaaattttaaaatatttctaaaag |
116 |
Q |
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| T |
5628593 |
agacagagtagcatatctcacgttgtaggttaagacttgatagcggttgttgttcttataaatttaacttttcttcggaattttaaaatatttctaaaag |
5628692 |
T |
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| Q |
117 |
attcagccctaggctaagtaagtatgagagtaattttagactttagagttctataatccagagttgaattggttaag |
193 |
Q |
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| T |
5628693 |
attcaaccctaggctaagtaagtatgagagtaattttaaactttagagttctataattcagagttgaattggttaag |
5628769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 218 - 394
Target Start/End: Complemental strand, 5628769 - 5628593
Alignment:
| Q |
218 |
cttaaccaattcaactctggattatagaactctaaagtctaaaattactctcatacttacttagcctagggctgaatcttttagaaatattttaaaattt |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5628769 |
cttaaccaattcaactctgaattatagaactctaaagtttaaaattactctcatacttacttagcctagggttgaatcttttagaaatattttaaaattc |
5628670 |
T |
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| Q |
318 |
cgaagaaaagttaaatttataagaacaacaaccgctgtcaagtcttatcccacaacgtgagatttgctactctgtct |
394 |
Q |
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| T |
5628669 |
cgaagaaaagttaaatttataagaacaacaaccgctatcaagtcttaacctacaacgtgagatatgctactctgtct |
5628593 |
T |
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