View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20303_high_4 (Length: 253)

Name: NF20303_high_4
Description: NF20303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20303_high_4
NF20303_high_4
[»] chr3 (8 HSPs)
chr3 (2-253)||(7050959-7051210)
chr3 (179-252)||(32558790-32558863)
chr3 (185-252)||(52717122-52717189)
chr3 (31-94)||(30174410-30174474)
chr3 (185-229)||(53343105-53343149)
chr3 (183-229)||(25694866-25694912)
chr3 (186-235)||(45781551-45781600)
chr3 (185-221)||(32558218-32558254)
[»] chr7 (3 HSPs)
chr7 (3-102)||(47762073-47762173)
chr7 (11-95)||(20290667-20290752)
chr7 (184-229)||(22297900-22297945)
[»] chr1 (8 HSPs)
chr1 (4-92)||(11398254-11398344)
chr1 (16-122)||(18136414-18136520)
chr1 (39-102)||(52935170-52935234)
chr1 (39-102)||(52942805-52942869)
chr1 (39-122)||(52946193-52946277)
chr1 (212-252)||(8641339-8641379)
chr1 (53-92)||(31230366-31230405)
chr1 (184-216)||(8641918-8641950)
[»] chr4 (5 HSPs)
chr4 (3-100)||(17225227-17225324)
chr4 (3-100)||(5373869-5373966)
chr4 (39-124)||(40225492-40225578)
chr4 (187-235)||(51282091-51282139)
chr4 (187-229)||(21838253-21838295)
[»] chr2 (3 HSPs)
chr2 (3-102)||(42735280-42735382)
chr2 (185-235)||(1521649-1521699)
chr2 (185-235)||(1522391-1522441)
[»] chr5 (5 HSPs)
chr5 (3-100)||(20319515-20319612)
chr5 (185-235)||(6697367-6697417)
chr5 (21-122)||(10548172-10548274)
chr5 (185-234)||(6695787-6695836)
chr5 (185-229)||(38558946-38558990)
[»] chr8 (3 HSPs)
chr8 (185-235)||(14707026-14707076)
chr8 (180-229)||(40600661-40600710)
chr8 (192-232)||(35348408-35348448)
[»] chr6 (1 HSPs)
chr6 (185-235)||(7683513-7683563)
[»] scaffold0590 (1 HSPs)
scaffold0590 (21-122)||(5017-5121)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 253
Target Start/End: Complemental strand, 7051210 - 7050959
Alignment:
Q  2 cgagagagaagaagagtttcatcacatattttccatccttatttccttggatttctcttatttataagggtccatattcctttttcccatattacccctt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051210 cgagagagaagaagagtttcatcacatattttccatccttatttccttggatttctcttatttataagggtccatattcctttttcccatattacccctt 7051111  T
Q  102 ccagttccatgactcattacaaccttcctcgcatgtcacatcaaatttgtaattgtttcgttcttgaatcgacttgattaaatggtggattctagggtga 201  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051110 ccagttccatgactcattacaaccttcctcacatgtcacatcaaatttgtaattgtttcgttcttgaatcgacttgattaaatggtggattctagggtga 7051011  T
Q  202 accatcaaataagtgattcatcggtggatcattttgagcaatagttgagagt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7051010 accatcaaataagtgattcatcggtggatcattttgagcaatagttgagagt 7050959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 32558863 - 32558790
Alignment:
Q  179 ttaaatggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattttgagcaatagttgagag 252  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32558863 ttaaatggtggattccagggtgaaccatcaaataagtgattcaccggtggaccattttgagcaatagttgagag 32558790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 52717122 - 52717189
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattttgagcaatagttgagag 252  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  52717122 ggtggattctagggtgaaccatcaaataactgattcaccggtggaccattttgagcaatagttgagag 52717189  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 30174410 - 30174474
Alignment:
Q  31 tttccatccttatttccttggattt-ctcttatttataagggtccatattcctttttcccatatt 94  Q
    ||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||    
T  30174410 tttccatgcttatttccttggcttttctcttatttataaggatccatattccttattcccatatt 30174474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 53343105 - 53343149
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattcatcggtgga 229  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||    
T  53343105 ggtggattctaggatgaaccatcaaataagtggttcatcggtgga 53343149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 25694912 - 25694866
Alignment:
Q  183 atggtggattctagggtgaaccatcaaataagtgattcatcggtgga 229  Q
    |||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  25694912 atggtggattctagagtgaaccatcatataagtggttcatcggtgga 25694866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 45781551 - 45781600
Alignment:
Q  186 gtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 235  Q
    ||||||||||||||||||||||||| || || |||| ||||||| |||||    
T  45781551 gtggattctagggtgaaccatcaaacaaatggttcaccggtggaccattt 45781600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 32558218 - 32558254
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattca 221  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  32558218 ggtggattctagggtgaaccatcaactaagtggttca 32558254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 47762173 - 47762073
Alignment:
Q  3 gagagagaagaagagtttcatcacatattttccatccttatttccttgg-atttctcttatttataagggtccatattcctttttcccatattacccctt 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||||||||||||||||||| ||| ||||| | ||||||    
T  47762173 gagagagaagaagagtttcatcacatattttcaatccttatttccttggcttttctcatatttataagggtccatattcctattttccataatgcccctt 47762074  T
Q  102 c 102  Q
    |    
T  47762073 c 47762073  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 20290667 - 20290752
Alignment:
Q  11 agaagagtttcatcacatattttccatc-cttatttccttggatttctcttatttataagggtccatattcctttttcccatatta 95  Q
    |||||| ||||||||||||||||||||  ||||||| ||||| |||||||||||||||||||||||||||| | ||| ||||||||    
T  20290667 agaagaatttcatcacatattttccatgtcttatttgcttggctttctcttatttataagggtccatattcatatttaccatatta 20290752  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 22297945 - 22297900
Alignment:
Q  184 tggtggattctagggtgaaccatcaaataagtgattcatcggtgga 229  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||||    
T  22297945 tggtggattctagagtgaaccatcaattaagtggttcatcggtgga 22297900  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 11398254 - 11398344
Alignment:
Q  4 agagagaagaagagtttcatcacata-ttttccatccttatttccttgg-atttctcttatttataagggtccatattcctttttcccata 92  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||||| ||| |||||    
T  11398254 agagagaagaagagtttcatcacatatttttccatccttatttccttggcttttctcatatttataagggtccatattcctattttccata 11398344  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 18136520 - 18136414
Alignment:
Q  16 agtttcatcacatattttccatccttatttccttggatttctct--tatttataagggtccatattcctttttcccatattaccccttccagttccatga 113  Q
    |||| ||||||||||||  ||| ||||||||||||| ||| |||  ||||||||||||||||||||||| ||||||||| | ||||||| |  || | ||    
T  18136520 agttacatcacatattt--catgcttatttccttggctttttctcatatttataagggtccatattcctatttcccataatgccccttctaactctaaga 18136423  T
Q  114 ctcattaca 122  Q
    |||||||||    
T  18136422 ctcattaca 18136414  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 52935234 - 52935170
Alignment:
Q  39 cttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttc 102  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||| | |||||||    
T  52935234 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttc 52935170  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 52942869 - 52942805
Alignment:
Q  39 cttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttc 102  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||| | |||||||    
T  52942869 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttc 52942805  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 52946277 - 52946193
Alignment:
Q  39 cttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttccagttccatgactcattaca 122  Q
    ||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||| | ||||||| |  || | |||||||||||    
T  52946277 cttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 52946193  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 8641339 - 8641379
Alignment:
Q  212 aagtgattcatcggtggatcattttgagcaatagttgagag 252  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  8641339 aagtgattcaccgatggatcattttgagcaatagttgagag 8641379  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 31230366 - 31230405
Alignment:
Q  53 tttctcttatttataagggtccatattcctttttcccata 92  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  31230366 tttctcatatttataagggtccatattcctatttcccata 31230405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 8641950 - 8641918
Alignment:
Q  184 tggtggattctagggtgaaccatcaaataagtg 216  Q
    |||||||||||||||||||||||||| ||||||    
T  8641950 tggtggattctagggtgaaccatcaactaagtg 8641918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 17225227 - 17225324
Alignment:
Q  3 gagagagaagaagagtttcatcacatattttccatccttatttccttgg-atttctcttatttataagggtccatattcctttttcccatattacccct 100  Q
    |||||||||||||||||||||||||||| |||||| |||| ||||||||  |||||||||||||||||||||| |||| || ||||||||||| |||||    
T  17225227 gagagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcc-tatttctatttcccatattgcccct 17225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 5373869 - 5373966
Alignment:
Q  3 gagagagaagaagagtttcatcacatattttccatccttatttccttg-gatttctcttatttataagggtccatattcctttttcccatattacccct 100  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||||||||   |||||||||||||||||||||| |||| || ||||||||||| |||||    
T  5373869 gagagagaagaagagtttcatcacacatttttcatgcttatttccttgacttttctcttatttataagggtcc-tatttctatttcccatattgcccct 5373966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 40225492 - 40225578
Alignment:
Q  39 cttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttccagttccatgactcattacaac 124  Q
    ||||||||||||| ||| ||| ||||||| ||||||||||||||| ||||||||| | ||||||| |  || | |||||||||||||    
T  40225492 cttatttccttggcttttctcatatttattagggtccatattcctatttcccataatgccccttctaactctaagactcattacaac 40225578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 51282139 - 51282091
Alignment:
Q  187 tggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 235  Q
    |||||||||||||||||||||||| ||||| |||| ||||||| |||||    
T  51282139 tggattctagggtgaaccatcaaacaagtggttcaccggtggaccattt 51282091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 21838295 - 21838253
Alignment:
Q  187 tggattctagggtgaaccatcaaataagtgattcatcggtgga 229  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||    
T  21838295 tggattctaggatgaaccatcaattaagtggttcatcggtgga 21838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 42735382 - 42735280
Alignment:
Q  3 gagagagaagaagagtttcatcacatattttccatccttatttccttg-gatttctcttatttata--agggtccatattcctttttcccatattacccc 99  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||   |||||| ||||||||  ||||||||||||||| ||||||||| | ||||    
T  42735382 gagagagaataagagtttcatcacatatttttcatgcttatttccttgccttttctcatatttataagagggtccatattcctatttcccataatgcccc 42735283  T
Q  100 ttc 102  Q
    |||    
T  42735282 ttc 42735280  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 1521649 - 1521699
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 235  Q
    |||||||||||||||||||||||||| ||||| |||| ||||||| |||||    
T  1521649 ggtggattctagggtgaaccatcaaacaagtggttcaccggtggaccattt 1521699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 1522441 - 1522391
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 235  Q
    ||||||||||||| |||||||||||| ||||| |||| ||||||| |||||    
T  1522441 ggtggattctaggatgaaccatcaaacaagtggttcaccggtggaccattt 1522391  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 20319515 - 20319612
Alignment:
Q  3 gagagagaagaagagtttcatcacatattttccatccttatttccttgga--tttctcttatttataagggtccatattcctttttcccatattacccct 100  Q
    ||||||||||||||||||||||||| || || ||| ||||||||| ||||  |||||||||||||||||||||| |||| || ||||||||||| |||||    
T  20319515 gagagagaagaagagtttcatcacacatatttcatgcttatttcc-tggacttttctcttatttataagggtcc-tatttctatttcccatattgcccct 20319612  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 6697417 - 6697367
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 235  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||| |||||    
T  6697417 ggtggattctagggtgaaccatcaaataagtggttcaccggcggaccattt 6697367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 10548274 - 10548172
Alignment:
Q  21 catcacatattttccatccttatttccttggattt-ctcttatttataagggtccatattcctttttcccatattaccccttccagttccatgactcatt 119  Q
    ||||||| || |||||| ||||||||||||| ||| ||| ||||||||| ||||||||||||| ||| ||||| | ||||||| |  || | ||||||||    
T  10548274 catcacacatattccatacttatttccttggcttttctcatatttataaaggtccatattcctattttccataatgccccttctaactctaagactcatt 10548175  T
Q  120 aca 122  Q
    |||    
T  10548174 aca 10548172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 6695787 - 6695836
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcatt 234  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||| ||||    
T  6695787 ggtgtattctagggtgaaccatcaaataagtggttcaccggtggaccatt 6695836  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 38558946 - 38558990
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattcatcggtgga 229  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||    
T  38558946 ggtggattctaggatgaaccattaaataagtggttcatcggtgga 38558990  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 14707076 - 14707026
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 235  Q
    |||||||||||||||||||||||||| ||||| |||| |||||| ||||||    
T  14707076 ggtggattctagggtgaaccatcaaacaagtggttcaccggtggttcattt 14707026  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 40600710 - 40600661
Alignment:
Q  180 taaatggtggattctagggtgaaccatcaaataagtgattcatcggtgga 229  Q
    |||| |||||||| |||| |||||||||||||||||| ||||||||||||    
T  40600710 taaacggtggattttaggatgaaccatcaaataagtggttcatcggtgga 40600661  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 35348448 - 35348408
Alignment:
Q  192 tctagggtgaaccatcaaataagtgattcatcggtggatca 232  Q
    |||| ||||||||||||||||||||||||| ||||| ||||    
T  35348448 tctaaggtgaaccatcaaataagtgattcaccggtgaatca 35348408  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 7683563 - 7683513
Alignment:
Q  185 ggtggattctagggtgaaccatcaaataagtgattcatcggtggatcattt 235  Q
    |||||||||||||||||| ||||||| || || |||| |||||||||||||    
T  7683563 ggtggattctagggtgaatcatcaaacaaatggttcaccggtggatcattt 7683513  T

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Target: scaffold0590 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 5017 - 5121
Alignment:
Q  21 catcacatattttccatccttatttccttggattt-ctcttatttata--agggtccatattcctttttcccatattaccccttccagttccatgactca 117  Q
    ||||||| || || ||| ||||||||||||| ||| ||| ||||||||  ||||||||||||||| ||||||||| | ||||||| |  || | ||||||    
T  5017 catcacacatatttcatgcttatttccttggcttttctcatatttatataagggtccatattcctatttcccataatgccccttctaactctaagactca 5116  T
Q  118 ttaca 122  Q
    |||||    
T  5117 ttaca 5121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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