View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20303_low_1 (Length: 608)
Name: NF20303_low_1
Description: NF20303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20303_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 7398313 - 7398906
Alignment:
| Q |
1 |
gtgtaagtttcaagcatccatggacatagggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttcttcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7398313 |
gtgtaagtttcaagcatccatggacatagggtcgtttcctatagcctccaaaatattataaggaaaagaaacttcaatatcaatactaccttcttcttcc |
7398412 |
T |
|
| Q |
101 |
ccaccaagcacattaactataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattaccgtaataattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7398413 |
ccaccaagcacattaactataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattaccgtagtaattga |
7398512 |
T |
|
| Q |
201 |
accgtggtgaactgcttgctatcaacaaattacttgctggtttacatggctctagtatcgacggcgttttcaaccaagattcaatatcactcattatctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7398513 |
accgtggtgaactgcttgctatcaacaaattacttgctgatttaactggctctagtatcgacggcgttttcaaccaagattcaatatcactcattatctt |
7398612 |
T |
|
| Q |
301 |
ctcatgatgagattttgatgaaatctccttgttcatttctatagcaattttactaatcccactttccattaactcccctatttgcattattacacatcca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7398613 |
ctcatgatgagattttgatgaaatctccttgttcatttccatagcaattttaccaatcccactttccattaactcccctatttgcattattacacatcca |
7398712 |
T |
|
| Q |
401 |
actgctccgattccattcccaaaataattctcttctaactttggacacattcttgttctacaatctatgggtaacacgaataccgacctttcttctgagt |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
7398713 |
actgctccgattccattcccaaaataattctcttctaactttgggcacattcttgttctacaatctatgggtaacacgaatgccgacctttcttctgaat |
7398812 |
T |
|
| Q |
501 |
tacgattttgtttacttataaataaacgccaaaggtgacttaaaagcgcttgcaatgaagatatcgttattattttatcactactattgctact |
594 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7398813 |
tacgattttgtttacttataaataaacgccaaaggtgacttaaaagcgcttgcaatgaagatatcgttattattttatcactactattgctact |
7398906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 594
Target Start/End: Original strand, 39075079 - 39075654
Alignment:
| Q |
16 |
atccatggacatagggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttcttccccaccaagcacatta |
115 |
Q |
| |
|
||||||||||| | | || ||||| ||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||| |||||||||||| || |
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|
| T |
39075079 |
atccatggacagatgatcatttcccatagcctccaaaatatcataaggaagacaaacttgaatatcaacactaccttcttcttcaccaccaagcacaata |
39075178 |
T |
|
| Q |
116 |
actataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattaccgtaataattgaaccgtggtgaactgc |
215 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
39075179 |
actctaccaatatttcttttaagtccaacaccatttctaactgcaattggcttaccccaaccaaagtcattgccgtaataattgaaccgtggtgaactgc |
39075278 |
T |
|
| Q |
216 |
ttgctatcaacaaattacttgctggtttacatggctctagtatcgacggcgttttcaaccaagattcaatatcactcattatcttctcatgatgagattt |
315 |
Q |
| |
|
||||||||||||||||||||| || | ||| || ||| |||| ||||| |||||||||||||| ||| | | ||| || ||||||||||||||||| |
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| T |
39075279 |
ttgctatcaacaaattacttgatgatctacctgcctccggtatagacggggttttcaaccaagactcatagttattcactaccttctcatgatgagattg |
39075378 |
T |
|
| Q |
316 |
tgatgaaatctccttgttcatttctatagcaattttactaatcccactttccattaactcccctatttgcattattacacatccaactgctccgattcca |
415 |
Q |
| |
|
| || ||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||||| |
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|
| T |
39075379 |
tatagatatcaccttgttcatttccatagcaattttaccaatcccactttccattaattcccctacttgcattattacatatccagttgctccgattcca |
39075478 |
T |
|
| Q |
416 |
ttcccaaaataattctcttctaactttggacacattcttgttctacaatctatgggtaacacgaataccgacctttcttctgagttacgattttgtttac |
515 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| ||| |||||||||||| |
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|
| T |
39075479 |
cttccaaaataattatcttctaactttggacacattcttgtcctacaatctatgggtaacacgaaagcagacctttcttctggtttaagattttgtttac |
39075578 |
T |
|
| Q |
516 |
ttataaataaacgccaaaggtgacttaaaagcgcttgcaatgaagatatcgttattattttatcactactattgctact |
594 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |
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|
| T |
39075579 |
ttataattaaacgccaaacgtgacttaaaagcgcttgcaatgaagata---ttattattttctcactactattactact |
39075654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 39097552 - 39097621
Alignment:
| Q |
28 |
agggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttct |
97 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |
|
|
| T |
39097552 |
agggtcatttcccatagcctccaaaatatcataagaaaggcaaacttcaacatcaatactaccttcttct |
39097621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 39087890 - 39087940
Alignment:
| Q |
43 |
agcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttc |
93 |
Q |
| |
|
|||||||||||| ||||||| || | |||||||||||||||| |||||||| |
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| T |
39087890 |
agcctccaaaatctcataagaaagacaaacttcaatatcaatgctaccttc |
39087940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 35 - 189
Target Start/End: Original strand, 34173992 - 34174146
Alignment:
| Q |
35 |
tttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttcttccccaccaagcacattaactataccaatatttcttt |
134 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||||| || | | ||||| |||| |||||| ||| |
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|
| T |
34173992 |
tttccaatagcctccaaaatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccacaaaatatagtaactttaccgatattttttt |
34174091 |
T |
|
| Q |
135 |
taagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattacc |
189 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
34174092 |
gaagtccaaccccattcctaactgcaattggcttaccccaaccaaagtcattacc |
34174146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 419 - 581
Target Start/End: Original strand, 34174382 - 34174541
Alignment:
| Q |
419 |
ccaaaataattctcttctaactttggacacattcttgttctacaatctatgggtaacacgaataccgacctttcttctgagttacgattttgtttactta |
518 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||| ||| | | ||||||||| ||| ||||||||||||||| |
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| T |
34174382 |
ccaaaataattctctgctaactttggacacattcttgtcctacaatctattggtaacctgaaaatggtattttcttctggtttaagattttgtttactta |
34174481 |
T |
|
| Q |
519 |
taaataaacgccaaaggtgacttaaaagcgcttgcaatgaagatatcgttattattttatcac |
581 |
Q |
| |
|
|| ||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||| |
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|
| T |
34174482 |
tagttaaacgccaaaagtggcttaaaagtgcttgcaatgaagata---ttattattttatcac |
34174541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 8936347 - 8936278
Alignment:
| Q |
28 |
agggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttct |
97 |
Q |
| |
|
|||||| ||||| || ||||||||||| ||||| |||| | |||||| || |||||||||||||||||| |
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|
| T |
8936347 |
agggtcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttct |
8936278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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