View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20303_low_3 (Length: 385)
Name: NF20303_low_3
Description: NF20303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20303_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 24 - 366
Target Start/End: Complemental strand, 6534303 - 6533958
Alignment:
| Q |
24 |
agcatggcttcctctactctttcaactcct---cctaatctcctcaaacaccaaaacagaccctcttccaccacctcatcacgacgttcctccacctttc |
120 |
Q |
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| T |
6534303 |
agcatggcttcctctactctttcaactccttctcctaatctcctcaaacaccaaaacagaccctcttccaccacctcatcacgacgttcctccacctttc |
6534204 |
T |
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| Q |
121 |
ttccacctataagatcctcagtttcagaaataccacccttccaagtctccatctctcaaccacaaacaaccaaacttccgatacgtaaaatccctggtga |
220 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6534203 |
ttccacctataagatcctcagtttcagaaaaaccacccttccaagtctccatctctcaaccacaaacaaccaaacttccgatccgtaaaatccctggtga |
6534104 |
T |
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| Q |
221 |
ctatggcatcccattcatccaaccttacaaagaccgtttagactatttctacaaccaaggtcgtgatgaatacttcaaatcacgtatccaaaaataccag |
320 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6534103 |
ctatggcatcccattcatccaaccatacaaagaccgtttagactatttctacaaccaaggtcgtgatgaatacttcaaatcacgtatccaaaaataccag |
6534004 |
T |
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| Q |
321 |
tcaactatcttccgcactaacgttcctcctggtcctttcatagctc |
366 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6534003 |
tcaactatcttccgcactaacgttccacctggtcctttcatagctc |
6533958 |
T |
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