View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20303_low_4 (Length: 375)
Name: NF20303_low_4
Description: NF20303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20303_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 47592369 - 47592044
Alignment:
| Q |
17 |
attctccactgctccattttcagagaaattgactttattctattcaattaaaaattaattagtcctccaaataaaattagttataattatgtgaataaga |
116 |
Q |
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| T |
47592369 |
attctccactgctccattttcagagaaattgactttattctattcaattaaaaattaattagtcctccaaataaaattagttataattatgtgaataaga |
47592270 |
T |
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| Q |
117 |
gattaaattagctttgtgagttaccttgggatagttaagaacaggggaactagcagtatcatcaagaggtgaagactgttgacttttcctaccatattct |
216 |
Q |
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| T |
47592269 |
gattaaattagctttgtgagttaccttgggatagttaagaacaggggaactagcagtatcatcaagaggtgaagactgttgacttttcctaccatattct |
47592170 |
T |
|
| Q |
217 |
ttacccttctttttggattctttggaagttgaagaatgccaatttacacaataaggttgttggtaattttcctctacatgatagtactgaggaggtccag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47592169 |
ttacccttctttttggattctttggaagttgaagaatgccaatttacacaataaggttgttggtaattttcctctacatgatagtactgtggaggtccag |
47592070 |
T |
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| Q |
317 |
aagaagcatcagaaaccatggataaa |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
47592069 |
aagaagcatcagaaaccatggataaa |
47592044 |
T |
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