View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20303_low_5 (Length: 286)
Name: NF20303_low_5
Description: NF20303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20303_low_5 |
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| [»] chr3 (13 HSPs) |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 6526958 - 6527252
Alignment:
| Q |
1 |
tgaatgacatgccactttgttgtttaagggaattttggtggattcaatgacatccaactagagaaaaaaccactgtcctcatggtggatgggagcttcca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
6526958 |
tgaatgacatgccactttgttgtttaagggaattttggtggattcaatgacatccaacttgagaaaaaaccactgtcctcatggtggatgagagcttcca |
6527057 |
T |
|
| Q |
101 |
tggtgtttggaacaaccaatgactcttacaatgattcttacaa---------tgcattttatatgctgccaaatgtaacacataaccattctgcaatgca |
191 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6527058 |
tggtgtttggaacaaccaatgactcttccaatgatttttactaagactggactgcattttatatgctgccaaatgtaacacagaaccattctgcaatgca |
6527157 |
T |
|
| Q |
192 |
tcattccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgt |
286 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6527158 |
ccactccaaggaaattaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgt |
6527252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 6848539 - 6848833
Alignment:
| Q |
1 |
tgaatgacatgccactttgttgtttaagggaattttggtggattcaatgacatccaactagagaaaaaaccactgtcctcatggtggatgggagcttcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
6848539 |
tgaatgacatgccactttgttgtttaagggaattttggtggattcaatgacatccaacttgagaaaaaaccactgtcctcatggtggatgggatcttcca |
6848638 |
T |
|
| Q |
101 |
tggtgtttggaacaaccaatgactcttacaatgattcttac---------aatgcattttatatgctgccaaatgtaacacataaccattctgcaatgca |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
6848639 |
tggtgtttggaacaaccaatgactcttacaatgattcttactaagactggactgcattttatatgctgccaaatgtaacacagaaccattctgcaacgca |
6848738 |
T |
|
| Q |
192 |
tcattccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgt |
286 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
6848739 |
ccactccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacagagaatattattgttgagatgt |
6848833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 6943627 - 6943522
Alignment:
| Q |
6 |
gacatgccactttgttgtttaagggaattttggtggattcaatgacatccaactagagaaaaaaccactgtcctcatggtggatgggagcttccatggtg |
105 |
Q |
| |
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||||| ||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||||| ||||||||| ||| || |
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| T |
6943627 |
gacataccactttgttgccaaagggaattttggtgcattcaatggcatccaactcgagaaaaaacctctgtcctcatggtggacgggagcttcgatgatg |
6943528 |
T |
|
| Q |
106 |
tttgga |
111 |
Q |
| |
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|||||| |
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| T |
6943527 |
tttgga |
6943522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 6939252 - 6939151
Alignment:
| Q |
10 |
tgccactttgttgtttaagggaattttggtggattcaatgacatccaactagagaaaaaaccactgtcctcatggtggatgggagcttccatggtgtttg |
109 |
Q |
| |
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|||||||||||| | || ||||||||| | |||||||| ||||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||||| |
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| T |
6939252 |
tgccactttgttttcaaatggaattttgtcgaattcaatggcatccaactcgagaaaaaacctctgtcctcgtggtgggtgggagcttccatggtgtttg |
6939153 |
T |
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| Q |
110 |
ga |
111 |
Q |
| |
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|| |
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| T |
6939152 |
ga |
6939151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 6940430 - 6940325
Alignment:
| Q |
6 |
gacatgccactttgttgtttaagggaattttggtggattcaatgacatccaactagagaaaaaaccactgtcctcatggtggatgggagcttccatggtg |
105 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||| || |||||||| | | || |
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| T |
6940430 |
gacataccactttgttgccaaagggaattttggtgcattcaatggcatccaactcgagaaaaaacctctgtcctcatggtagacaggagcttcgacgatg |
6940331 |
T |
|
| Q |
106 |
tttgga |
111 |
Q |
| |
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|||||| |
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| T |
6940330 |
tttgga |
6940325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6789018 - 6789060
Alignment:
| Q |
1 |
tgaatgacatgccactttgttgtttaagggaattttggtggat |
43 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6789018 |
tgaatgacatgccactttgttgttaaagggaattttggtggat |
6789060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 6558494 - 6558547
Alignment:
| Q |
233 |
actccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgt |
286 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |
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| T |
6558494 |
actccaagtggaataaatatgtgtttcagacagagaatatcattgtagagatgt |
6558547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 6796556 - 6796636
Alignment:
| Q |
112 |
acaaccaatgactcttacaatgattcttacaa---------tgcattttatatgctgccaaatgtaacacataaccattct |
183 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
6796556 |
acaatcaatgactcatacaatgattcttacaaagataggactgcattttatatgctgccaaatgtaacacagaaccattct |
6796636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 7745899 - 7745835
Alignment:
| Q |
12 |
ccactttgttgtttaagggaattttggtggattcaatgacatccaactagagaaaaaaccactgt |
76 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |||| |||| ||||||||| |||||| |
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| T |
7745899 |
ccactttgttgtcaaagggaattttggtgaattcaatggcatctaacttgagaaaaaatcactgt |
7745835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 6549823 - 6549862
Alignment:
| Q |
148 |
ttttatatgctgccaaatgtaacacataaccattctgcaa |
187 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
6549823 |
ttttatatgctgccaaatgtaacacagaaccattctgcaa |
6549862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 6558384 - 6558420
Alignment:
| Q |
145 |
gcattttatatgctgccaaatgtaacacataaccatt |
181 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
6558384 |
gcattttatatgctgccaaatgtaacacagaaccatt |
6558420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Original strand, 6558236 - 6558270
Alignment:
| Q |
80 |
catggtggatgggagcttccatggtgtttggaaca |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
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| T |
6558236 |
catggtgaatgggagcttccatggtgtttggaaca |
6558270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 111
Target Start/End: Original strand, 6549633 - 6549662
Alignment:
| Q |
82 |
tggtggatgggagcttccatggtgtttgga |
111 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
6549633 |
tggtggatgggagcttccatggtgtttgga |
6549662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 11665 - 11956
Alignment:
| Q |
1 |
tgaatgacatgccactttgttgtttaagggaattttggtggattcaatgacatccaactagagaaaaaaccactgtcctcatggtggatgggagcttcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11665 |
tgaatgacatgccactttgttgtttaagggaattttggtggattcaatgacatccaacttgagaaaaaaccactgtcctcatggtggatgggagcttcca |
11764 |
T |
|
| Q |
101 |
tggtgtttggaacaaccaatgactcttacaatgattcttac--------aatgcattttatatgctgccaaatgtaacacataaccattctgcaatgcat |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
11765 |
tggtgtttggaacaaccaatgactcttacaatgattcttaccaagactgactgcactttatatgctgccaaatgta--acagaaccattctgcaatgcac |
11862 |
T |
|
| Q |
193 |
cattccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacgaagaatatcattgttgagatgt |
286 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11863 |
cactccaaggaaactaggagcatcagtacaaagttaaccaactccaagtggaataaacatgtgtttcagacagagaatatcattgttgagatgt |
11956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 17793295 - 17793259
Alignment:
| Q |
3 |
aatgacatgccactttgttgtttaagggaattttggt |
39 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
17793295 |
aatgacataccactttgttgttaaagggaattttggt |
17793259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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