View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20303_low_6 (Length: 268)

Name: NF20303_low_6
Description: NF20303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20303_low_6
NF20303_low_6
[»] chr4 (4 HSPs)
chr4 (15-246)||(5373870-5374102)
chr4 (15-131)||(17225228-17225344)
chr4 (141-239)||(5353722-5353817)
chr4 (43-111)||(40225485-40225554)
[»] chr5 (2 HSPs)
chr5 (15-246)||(20319516-20319747)
chr5 (33-80)||(10548226-10548273)
[»] chr1 (6 HSPs)
chr1 (43-131)||(41956051-41956139)
chr1 (14-84)||(11398253-11398324)
chr1 (43-111)||(52935172-52935241)
chr1 (43-111)||(52942807-52942876)
chr1 (43-111)||(52946215-52946284)
chr1 (37-111)||(18136436-18136512)
[»] chr2 (1 HSPs)
chr2 (15-81)||(42735315-42735381)
[»] chr7 (1 HSPs)
chr7 (15-84)||(47762103-47762172)
[»] chr3 (2 HSPs)
chr3 (15-84)||(7051140-7051208)
chr3 (37-82)||(30174405-30174450)
[»] scaffold0590 (2 HSPs)
scaffold0590 (33-79)||(5018-5064)
scaffold0590 (33-86)||(7696-7749)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 5373870 - 5374102
Alignment:
Q  15 agagagaagaagagttttatcacacatttttcatgcttatttccttggcttttctcttatttataagggttctatttttatttcccatattgcccctgat 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  5373870 agagagaagaagagtttcatcacacatttttcatgcttatttccttgacttttctcttatttataagggtcctatttctatttcccatattgcccctgat 5373969  T
Q  115 tgctctttgacttattaaagaatctctccctagtttcttgagaaaccagtccacattgttattatttcttcatttaactgaaaacaatattaaaggatca 214  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5373970 tgctctttgacttattacagaatccctccctagtttcttgagaaaccagtccacattgttattatttcttcatttaactgaaaacaatattaaaggatca 5374069  T
Q  215 atacctaatt-ggatttggcatcttgcttcact 246  Q
    |||||||||| ||||||||||||||||||||||    
T  5374070 atacctaattgggatttggcatcttgcttcact 5374102  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 17225228 - 17225344
Alignment:
Q  15 agagagaagaagagttttatcacacatttttcatgcttatttccttggcttttctcttatttataagggttctatttttatttcccatattgcccctgat 114  Q
    ||||||||||||||||| |||||| || || |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  17225228 agagagaagaagagtttcatcacatatcttccatgcttacttccttggcttttctcttatttataagggtcctatttctatttcccatattgcccctgat 17225327  T
Q  115 tgctctttgacttatta 131  Q
    |||||||||||| ||||    
T  17225328 tgctctttgactcatta 17225344  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 5353722 - 5353817
Alignment:
Q  141 tccctagtttcttgagaaaccagtccacattgttattatttcttcatttaactgaaaacaatattaaaggatcaatacctaattggatttggcatcttg 239  Q
    ||||||||||||||||||||||||||||   |||||||  ||||||  || |||| ||||| ||| |||||  |||||| |||||||||||||| ||||    
T  5353722 tccctagtttcttgagaaaccagtccac---gttattagctcttcaaatatctgagaacaagattgaaggactaatacccaattggatttggcaacttg 5353817  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 40225485 - 40225554
Alignment:
Q  43 tttcatgcttatttccttggcttttctcttatttataagggttc-tatttttatttcccatattgcccct 111  Q
    |||||| ||||||||||||||||||||| ||||||| ||||| | ||||  ||||||||||| |||||||    
T  40225485 tttcatacttatttccttggcttttctcatatttattagggtccatattcctatttcccataatgcccct 40225554  T

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Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 20319516 - 20319747
Alignment:
Q  15 agagagaagaagagttttatcacacatttttcatgcttatttccttggcttttctcttatttataagggttctatttttatttcccatattgcccctgat 114  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  20319516 agagagaagaagagtttcatcacacatatttcatgcttatttcctggacttttctcttatttataagggtcctatttctatttcccatattgcccctgat 20319615  T
Q  115 tgctctttgacttattaaagaatctctccctagtttcttgagaaaccagtccacattgttattatttcttcatttaactgaaaacaatattaaaggatca 214  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20319616 tgctctttgacttattacagaatccctccctagtttcttgagaaaccagtccacattgttattatttcttcatttaactgaaaacaatattaaaggatca 20319715  T
Q  215 atacctaattggatttggcatcttgcttcact 246  Q
    ||||||||||||||||||||||||||||||||    
T  20319716 atacctaattggatttggcatcttgcttcact 20319747  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 10548273 - 10548226
Alignment:
Q  33 atcacacatttttcatgcttatttccttggcttttctcttatttataa 80  Q
    ||||||||| || ||| ||||||||||||||||||||| |||||||||    
T  10548273 atcacacatattccatacttatttccttggcttttctcatatttataa 10548226  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 41956139 - 41956051
Alignment:
Q  43 tttcatgcttatttccttggcttttctcttatttataagggttctatttttatttcccatattgcccctgattgctctttgacttatta 131  Q
    |||||||| |||||||||| |||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||| ||||    
T  41956139 tttcatgcctatttccttgacttttctcttatttataagggtcctatttctatttcccatattgtccttgattgctctttgactcatta 41956051  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 11398253 - 11398324
Alignment:
Q  14 cagagagaagaagagttttatcacacatttttc-atgcttatttccttggcttttctcttatttataagggt 84  Q
    |||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||| |||||||||||||    
T  11398253 cagagagaagaagagtttcatcacatatttttccatccttatttccttggcttttctcatatttataagggt 11398324  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 52935241 - 52935172
Alignment:
Q  43 tttcatgcttatttccttggcttttctcttatttataagggttc-tatttttatttcccatattgcccct 111  Q
    |||||| ||||||||||||||||||||| ||||||||||||| | ||||  ||||||||||| |||||||    
T  52935241 tttcatacttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52935172  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 52942876 - 52942807
Alignment:
Q  43 tttcatgcttatttccttggcttttctcttatttataagggttc-tatttttatttcccatattgcccct 111  Q
    |||||| ||||||||||||||||||||| ||||||||||||| | ||||  ||||||||||| |||||||    
T  52942876 tttcatacttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52942807  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 52946284 - 52946215
Alignment:
Q  43 tttcatgcttatttccttggcttttctcttatttataagggttc-tatttttatttcccatattgcccct 111  Q
    |||||| ||||||||||||||||||||| ||||||||||||| | ||||  ||||||||||| |||||||    
T  52946284 tttcatacttatttccttggcttttctcatatttataagggtccatattcctatttcccataatgcccct 52946215  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 18136512 - 18136436
Alignment:
Q  37 cacatttttcatgcttatttccttggc-ttttctcttatttataagggttc-tatttttatttcccatattgcccct 111  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||||| | ||||  ||||||||||| |||||||    
T  18136512 cacatatttcatgcttatttccttggctttttctcatatttataagggtccatattcctatttcccataatgcccct 18136436  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 42735381 - 42735315
Alignment:
Q  15 agagagaagaagagttttatcacacatttttcatgcttatttccttggcttttctcttatttataag 81  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||    
T  42735381 agagagaataagagtttcatcacatatttttcatgcttatttccttgccttttctcatatttataag 42735315  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 47762172 - 47762103
Alignment:
Q  15 agagagaagaagagttttatcacacatttttcatgcttatttccttggcttttctcttatttataagggt 84  Q
    ||||||||||||||||| |||||| |||||  || ||||||||||||||||||||| |||||||||||||    
T  47762172 agagagaagaagagtttcatcacatattttcaatccttatttccttggcttttctcatatttataagggt 47762103  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 7051208 - 7051140
Alignment:
Q  15 agagagaagaagagttttatcacacatttttcatgcttatttccttggcttttctcttatttataagggt 84  Q
    ||||||||||||||||| |||||| ||||| ||| |||||||||||||  ||||||||||||||||||||    
T  7051208 agagagaagaagagtttcatcacatattttccatccttatttccttgg-atttctcttatttataagggt 7051140  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 30174405 - 30174450
Alignment:
Q  37 cacatttttcatgcttatttccttggcttttctcttatttataagg 82  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||    
T  30174405 cacaatttccatgcttatttccttggcttttctcttatttataagg 30174450  T

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Target: scaffold0590 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 5018 - 5064
Alignment:
Q  33 atcacacatttttcatgcttatttccttggcttttctcttatttata 79  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||    
T  5018 atcacacatatttcatgcttatttccttggcttttctcatatttata 5064  T

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Target: scaffold0590; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 7696 - 7749
Alignment:
Q  33 atcacacatttttcatgcttatttccttggcttttctcttatttataagggttc 86  Q
    |||| |||| |||||||||||||| ||||  ||||||| |||||||||||||||    
T  7696 atcagacatatttcatgcttattttcttgatttttctcgtatttataagggttc 7749  T

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