View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_high_11 (Length: 370)
Name: NF20304_high_11
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 26 - 354
Target Start/End: Original strand, 38912282 - 38912611
Alignment:
| Q |
26 |
atacttggtaggcacagaaaatatttcattgacaaggacataaattgggaatgaagattgagttcatactccagaaaataatatacaatggatgagtgaa |
125 |
Q |
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| T |
38912282 |
atacttgctaggcacataaaatatttcattgacaaggacataaattgggaatgaagattgagttcatactccagaaaataatatacaatggatgagtgaa |
38912381 |
T |
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| Q |
126 |
ggtttattcaacattggatgcctgaagtctacgttgatacgactatatctttgacttgtcttgtaactattgttccaattattactgct-nnnnnnntgt |
224 |
Q |
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| T |
38912382 |
ggtttattcaacattggatgcctgaagtctacgttgatacgactatatctttgacttgtcttgtaactattgtaccaattattactgctaaaaaaaatgt |
38912481 |
T |
|
| Q |
225 |
ctctaattcgtgcattcctctattcgttaatgttcaggcaaaagcaaaatctacttgttcatctaaaagaagaatataatatagtcatagaaataagggt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38912482 |
ctctaattcgtgcattcctctattcgttaatgttcaggcaaaagcaaaatctacttgttcatctaaaagaagaatataatatagtcatagaaataagggt |
38912581 |
T |
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| Q |
325 |
taccgacttaatcaatacaggtatatatag |
354 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38912582 |
taccgacttaatcaatacaggtatatatag |
38912611 |
T |
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