View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_high_12 (Length: 365)
Name: NF20304_high_12
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 29068600 - 29068258
Alignment:
| Q |
17 |
agatttgattctcaatcatatgtatcatctacatagagttgttacttgttacannnnnnnnnnnnnnnnnatcactgagttgttgagtactgac----ag |
112 |
Q |
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| T |
29068600 |
agatttgattctcaatcatatgtatcatctacatagagttgttacttgttacattttttcaaatttttttatcactgagttgttgagtactgactgacag |
29068501 |
T |
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| Q |
113 |
ttctgtcacatgttgnnnnnnnactgcaatttattagtagtaccaccttcattaattggtacaattcttcattaattattattactnnnnnnntgtattt |
212 |
Q |
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| T |
29068500 |
ttctgtcacatgttgtttttttactgcaatttattagtagtaccaccttcattaattggtacaattcttca------attattactaaaaaaatgtattt |
29068407 |
T |
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| Q |
213 |
--gtttttgnnnnnnnn--tataacgttacatttcatggtttgtggttcacatggcatttcgataccgatattttagctgagtgtggtcccattcaacat |
308 |
Q |
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| T |
29068406 |
atgtttttgaaaaaaaaaatataacgttacatttcatggtttgtggttcacatggcatttcgataccgatattttagctgagtgtggtcccattcaacat |
29068307 |
T |
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| Q |
309 |
gaagatgacgatcctatggacggtttggaattcccctcccctctgtgct |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29068306 |
gaagatgacgatcctatggacggtttggaattcccctcccctttgtgct |
29068258 |
T |
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