View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_high_15 (Length: 327)
Name: NF20304_high_15
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 45318660 - 45318960
Alignment:
| Q |
19 |
catgtttcatctctacttgtagaaacaggtaataaagacgaaaagtgtggcattcatgccgctaaatttgtctttctttttgaccttaaatgctattgtg |
118 |
Q |
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| T |
45318660 |
catgtttcatctctacttgtagaaacaggtaataaagacgaaaagtgtagcattcatgccgctaaatttgtctttctttttgaccttaaatgctattgtg |
45318759 |
T |
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| Q |
119 |
tggttcttctatggtcttcttatcgacgacttttatatcgctgtaagttcattcaatattgttacatagtaaataattgttgtctaattacaatctagga |
218 |
Q |
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| T |
45318760 |
tggttcttctatggtcttcttatcgacgacttttatatcgctgtaagttcattcaatattgttacatagtaaataattgttgtctaattacaatctagga |
45318859 |
T |
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| Q |
219 |
aatgctttgcttttaacttacgataattttggtatttatatttttataccgaaaaattgaaaataacaataatgaaagaaaggtgttttattgtctgtgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
45318860 |
aatgctttgcttttaacttacgataattttggtatttatatttttataccgaaaaattgaaaataacaataatgaaagaaagatgttttattgtttgtgc |
45318959 |
T |
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| Q |
319 |
t |
319 |
Q |
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| T |
45318960 |
t |
45318960 |
T |
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