View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20304_high_2 (Length: 631)

Name: NF20304_high_2
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20304_high_2
NF20304_high_2
[»] chr1 (11 HSPs)
chr1 (263-615)||(7521572-7521932)
chr1 (13-207)||(7521952-7522146)
chr1 (339-482)||(32573686-32573829)
chr1 (303-479)||(15582248-15582429)
chr1 (344-478)||(41404818-41404952)
chr1 (367-478)||(34970798-34970909)
chr1 (411-481)||(50138940-50139009)
chr1 (367-456)||(49765570-49765659)
chr1 (367-478)||(48046984-48047095)
chr1 (367-477)||(29465476-29465585)
chr1 (200-248)||(831845-831893)
[»] scaffold0039 (1 HSPs)
scaffold0039 (317-482)||(57617-57782)
[»] chr8 (5 HSPs)
chr8 (317-481)||(29844921-29845084)
chr8 (317-483)||(34924004-34924170)
chr8 (406-482)||(14111686-14111762)
chr8 (204-248)||(33969113-33969157)
chr8 (206-248)||(8438582-8438624)
[»] scaffold0022 (2 HSPs)
scaffold0022 (367-478)||(43497-43608)
scaffold0022 (367-478)||(77217-77328)
[»] chr5 (4 HSPs)
chr5 (366-483)||(7505320-7505436)
chr5 (374-478)||(30085584-30085688)
chr5 (200-248)||(30782828-30782876)
chr5 (411-477)||(16596796-16596862)
[»] scaffold0011 (1 HSPs)
scaffold0011 (344-481)||(8543-8678)
[»] chr4 (10 HSPs)
chr4 (325-477)||(41222935-41223087)
chr4 (367-478)||(48085206-48085316)
chr4 (367-483)||(31228992-31229107)
chr4 (367-477)||(50859398-50859508)
chr4 (374-478)||(35292637-35292741)
chr4 (367-477)||(55842036-55842146)
chr4 (374-474)||(13779932-13780032)
chr4 (374-474)||(35033214-35033314)
chr4 (367-477)||(55777856-55777966)
chr4 (374-474)||(25054764-25054864)
[»] chr7 (6 HSPs)
chr7 (339-482)||(19848421-19848559)
chr7 (369-478)||(12634055-12634164)
chr7 (374-478)||(19626099-19626203)
chr7 (441-483)||(260960-261002)
chr7 (367-477)||(28300734-28300843)
chr7 (369-477)||(5350342-5350450)
[»] chr2 (4 HSPs)
chr2 (374-478)||(17999014-17999118)
chr2 (374-478)||(28198555-28198659)
chr2 (367-478)||(28219680-28219791)
chr2 (367-478)||(10354843-10354954)
[»] chr3 (9 HSPs)
chr3 (374-478)||(44714006-44714110)
chr3 (367-478)||(39439293-39439404)
chr3 (367-477)||(2144555-2144664)
chr3 (366-415)||(23420504-23420553)
chr3 (382-478)||(24373430-24373526)
chr3 (374-478)||(25046056-25046160)
chr3 (374-478)||(32279042-32279146)
chr3 (367-479)||(42028647-42028759)
chr3 (367-396)||(25909551-25909580)
[»] chr6 (3 HSPs)
chr6 (367-477)||(10871928-10872038)
chr6 (376-479)||(29644613-29644716)
chr6 (367-477)||(10144760-10144869)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 263 - 615
Target Start/End: Complemental strand, 7521932 - 7521572
Alignment:
Q  263 tctcctcttttagaaagtaaaaacttatccactcctcccctaaaactaacatagcggaatggaacg----------gaatggaaaagaactgaatggaag 352  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||          ||||||||| |||| |||||||||    
T  7521932 tctcctcttttagaaagtaaaaacttatcctctcctcccctaaaactaacatagcggaatggaacgtaatggaatggaatggaaaggaacagaatggaag 7521833  T
Q  353 ggaacaatgatactattccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttata 452  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||    
T  7521832 ggaacaatgataccattccattgtttgaatattttatgatggaatggagctaattttccattctattgtttgaaaagtcgagagaattgaatgagttata 7521733  T
Q  453 acttatttatttcaattttacccttttatttnnnnnnnncatcaataggtggaacaaacagtaataacaattnnnnnnnnntctttaggtgggctaattt 552  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  7521732 acttatttatttcaattttacccttttattt-aaaaaaacatcaataggtggaacaaacagtaataacaatt-aaaaaaaatctttaggtgggctaattt 7521635  T
Q  553 atacaaatccaagcataaaatcaatgcatgaactcataaatgaaacatagataccactttatg 615  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7521634 atacagatccaagcataaaatcaatgcatgaactcataaatgaaacatggataccactttatg 7521572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 7522146 - 7521952
Alignment:
Q  13 attatactttagtggttgatgagctcaaacaaatgacaaattgttcatgataatccaacctaaattcgatttttggtagaattcttggacaaacattacc 112  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7522146 attatactttagtggttgatgagctcaaccaaatgacaaattgttcatgataatccaacctaaattcgatttttggtagaattcttggacaaacattact 7522047  T
Q  113 tacatcgcgatcgaactctgtattaagagcttctttctcttggaaaccaaagggttaatacataataaaagaataaattacaatatgctctctta 207  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7522046 tacatcgcgatcgaactcggtattaagagcttctttctcttggaaaccaaagggttaatacataataaaagaataaattacaatatgctctctta 7521952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 339 - 482
Target Start/End: Complemental strand, 32573829 - 32573686
Alignment:
Q  339 gaactgaatggaagggaacaatgatactattccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaa 438  Q
    |||| |||||||| |||| || ||| | |||||| |||||||||| ||||||||||||  || ||  |||||||||| ||||||||||||||  | ||||    
T  32573829 gaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacagaactagttttccattccattgtttgaaaagttaacagaa 32573730  T
Q  439 cggaatgagttataacttatttatttcaattttacccttttatt 482  Q
    ||||| |||||||||||| |||||| ||||||||||||| ||||    
T  32573729 cggaacgagttataacttttttattccaattttacccttatatt 32573686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 303 - 479
Target Start/End: Complemental strand, 15582429 - 15582248
Alignment:
Q  303 taaaactaacatagcggaatggaacggaatggaaaagaactgaatggaagggaac-----aatgatactattccactgtttggatattttatgatggaat 397  Q
    ||||||||||  ||||||| ||||||||||||||  |||  |||||||| |||||     ||  || | |||||| |||||||||| |||||||||||||    
T  15582429 taaaactaacggagcggaacggaacggaatggaacggaagggaatggaatggaacggaataaaaattccattccattgtttggatactttatgatggaat 15582330  T
Q  398 ggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttaccctttt 479  Q
    ||| || ||||||||||| |||||||| ||||| ||  |||| ||| |||||||||    |||||| |||||||||||||||    
T  15582329 ggaactaattttccattccattgtttggaaagttgacggaacagaaagagttataaaaattttattccaattttaccctttt 15582248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 478
Target Start/End: Complemental strand, 41404952 - 41404818
Alignment:
Q  344 gaatggaagggaacaatgatactattccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaa 443  Q
    |||||||| |||| || ||| | ||||||||||||||||| |||| || |||||  |  | |||| |||||| |||||||| ||| || |  ||||||||    
T  41404952 gaatggaacggaataaagattccattccactgtttggatactttacgacggaatctagttaatttcccattccattgtttggaaaatcaacggaacggaa 41404853  T
Q  444 tgagttataacttatttatttcaattttacccttt 478  Q
    |||||||||| |  |||||| ||||||||||||||    
T  41404852 tgagttataaatattttattccaattttacccttt 41404818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 478
Target Start/End: Complemental strand, 34970909 - 34970798
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| |||||||||||||||||| |||||||| || |||| ||| || |||||||| ||||| ||  |||||| | | |||||| | | |||||| ||    
T  34970909 attccattgtttggatattttatgacggaatggaactaatttcccactccattgtttggaaagtggacggaacgggaagtgttataccctttttattcca 34970810  T
Q  467 attttacccttt 478  Q
     |||||||||||    
T  34970809 tttttacccttt 34970798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 481
Target Start/End: Original strand, 50138940 - 50139009
Alignment:
Q  411 cattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttacccttttat 481  Q
    ||||| ||||||||| |||||||  ||| |||||| |||||||||| ||||||||||| ||||||||||||    
T  50138940 cattccattgtttgagaagtcgatggaagggaatgtgttataactt-tttatttcaatcttacccttttat 50139009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 367 - 456
Target Start/End: Complemental strand, 49765659 - 49765570
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataactt 456  Q
    |||||| |||||| |||||||| ||||||||| | || |||| ||| || |||||||||||||| ||  |||||||| | ||||||||||    
T  49765659 attccattgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagtggacggaacggaaagtgttataactt 49765570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 478
Target Start/End: Complemental strand, 48047095 - 48046984
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| |||||||| |||||| ||  ||||||| || |||| ||| || |||||||| |||||  |  ||||||||   |||||||||| |||||| ||    
T  48047095 attccattgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagtgaatggaacggaacatgttataacttttttattcca 48046996  T
Q  467 attttacccttt 478  Q
    ||||||||||||    
T  48046995 attttacccttt 48046984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 29465476 - 29465585
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||||||||||| ||||||||||||||  |||    ||||||||||| |||||||| ||||| ||   || ||||| | ||||||||| |||||| ||    
T  29465476 attccactgtttgggtattttatgatggagcggaatgcattttccattccattgtttggaaagttgacgaaatggaataaattataactt-tttattcca 29465574  T
Q  467 attttaccctt 477  Q
     ||||||||||    
T  29465575 tttttaccctt 29465585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 831893 - 831845
Alignment:
Q  200 ctctcttaagagaaacttgaattgcattctacttctctcttatgttaaa 248  Q
    ||||| |||||||| |||||||| |||||| |||| |||||||||||||    
T  831893 ctctcctaagagaagcttgaattacattcttcttccctcttatgttaaa 831845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 317 - 482
Target Start/End: Complemental strand, 57782 - 57617
Alignment:
Q  317 cggaatggaacggaatggaaaagaactgaatggaagggaacaatgatactattccactgtttggatattttatgatggaatggaccttattttccattct 416  Q
    ||||||||||||||||||||  |||| |||| ||| |||| || |||   |||||| |||||||||| |||||||||||| ||| ||  ||||||||||     
T  57782 cggaatggaacggaatggaatggaacggaattgaatggaataaagatttcattccattgtttggatactttatgatggaacggaactagttttccattcc 57683  T
Q  417 attgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttacccttttatt 482  Q
    |||||||| |||||  |  |||||||| |||||||||||| |||||||||||||||||||| ||||    
T  57682 attgtttggaaagttaacggaacggaacgagttataacttttttatttcaattttacccttatatt 57617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 317 - 481
Target Start/End: Complemental strand, 29845084 - 29844921
Alignment:
Q  317 cggaatggaacggaatggaaaagaactgaatggaagggaacaatgatactattccactgtttggatattttatgatggaatggaccttattttccattct 416  Q
    ||||||||||   |||||||  |||| |||||||| |||| || ||||  |||||||||||||||||||| |||| |||||||| || |||| ||||||     
T  29845084 cggaatggaatataatggaacggaacggaatggaacggaataaagatatcattccactgtttggatatttaatgacggaatggaactaatttcccattcc 29844985  T
Q  417 attgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttacccttttat 481  Q
    ||||||||| |||||||  ||||  ||||  ||||||||| ||||||||||||||||||||||||    
T  29844984 attgtttgagaagtcgatggaacataatggattataactt-tttatttcaattttacccttttat 29844921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 317 - 483
Target Start/End: Original strand, 34924004 - 34924170
Alignment:
Q  317 cggaatggaacggaatggaaaagaactgaatggaagggaacaatgatactattccactgtttggatattttatgatggaatggaccttattttccattct 416  Q
    ||||||||||||||||||||  |||| |||| ||| |||| || |||   |||||| |||||||||| |||||||||||| | | ||  ||||||||||     
T  34924004 cggaatggaacggaatggaatggaacagaattgaatggaataaagatttcattccattgtttggatactttatgatggaacgaaactagttttccattcc 34924103  T
Q  417 attgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttacccttttattt 483  Q
    |||||||| |||||  |  |||||||| |||||||||||| |||||| ||||||||||||| |||||    
T  34924104 attgtttggaaagttaacggaacggaacgagttataacttttttattccaattttacccttatattt 34924170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 482
Target Start/End: Original strand, 14111686 - 14111762
Alignment:
Q  406 ttttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttacccttttatt 482  Q
    |||||||||| |||||||| |||||     |||||||| |||||||||||| |||||| ||||||||||||| ||||    
T  14111686 ttttccattccattgtttggaaagttagcggaacggaacgagttataacttttttattccaattttacccttatatt 14111762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 33969113 - 33969157
Alignment:
Q  204 cttaagagaaacttgaattgcattctacttctctcttatgttaaa 248  Q
    |||||||||||||||||||||||||| || | |||||||||||||    
T  33969113 cttaagagaaacttgaattgcattctcctcccctcttatgttaaa 33969157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 8438624 - 8438582
Alignment:
Q  206 taagagaaacttgaattgcattctacttctctcttatgttaaa 248  Q
    ||||||||||||||||| || || |||||||||||||||||||    
T  8438624 taagagaaacttgaattacactccacttctctcttatgttaaa 8438582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 367 - 478
Target Start/End: Original strand, 43497 - 43608
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| ||||||||||||||| || |||||| | || ||||  ||||| |||||||| ||||| || |||||||||||||||||||||| |||||||||    
T  43497 attccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttca 43596  T
Q  467 attttacccttt 478  Q
    ||||||||||||    
T  43597 attttacccttt 43608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 367 - 478
Target Start/End: Original strand, 77217 - 77328
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| ||||||||||||||| || |||||| | || ||||  ||||| |||||||| ||||| || |||||||||||||||||||||| |||||||||    
T  77217 attccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttca 77316  T
Q  467 attttacccttt 478  Q
    ||||||||||||    
T  77317 attttacccttt 77328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 366 - 483
Target Start/End: Original strand, 7505320 - 7505436
Alignment:
Q  366 tattccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttc 465  Q
    ||||||| | ||| |||| |||||||||||||||| || ||||||||||| |||||||||||||| ||  ||||||||||||||||| ||| |||||| |    
T  7505320 tattccattatttagatactttatgatggaatggagctaattttccattccattgtttgaaaagttgacggaacggaatgagttatatcttttttattcc 7505419  T
Q  466 aattttacccttttattt 483  Q
    ||||||| ||||||||||    
T  7505420 aatttta-ccttttattt 7505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 478
Target Start/End: Complemental strand, 30085688 - 30085584
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    |||||||||||||||  | ||||| || || |||||||| || |||||||| |||||  |  ||||||||||| ||||||||| ||||||||| ||||||    
T  30085688 tgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataacttttttatttcatttttac 30085589  T
Q  474 ccttt 478  Q
    |||||    
T  30085588 ccttt 30085584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 30782828 - 30782876
Alignment:
Q  200 ctctcttaagagaaacttgaattgcattctacttctctcttatgttaaa 248  Q
    ||||||||||||||||||||||| |||||| || | |||||||||||||    
T  30782828 ctctcttaagagaaacttgaattacattctcctcccctcttatgttaaa 30782876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 16596796 - 16596862
Alignment:
Q  411 cattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttaccctt 477  Q
    ||||| |||||||||||| | ||   || ||||||||||||||||| |||||| |||||||||||||    
T  16596796 cattccattgtttgaaaaattgatgtaatggaatgagttataacttttttattccaattttaccctt 16596862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 344 - 481
Target Start/End: Original strand, 8543 - 8678
Alignment:
Q  344 gaatggaagggaacaatgatactattccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaa 443  Q
    ||||||||  ||| || ||||| |||||||| ||||||||||| |||| |||||||| || ||||  ||||| ||||||| | |||| || ||||| |||    
T  8543 gaatggaacagaataaagataccattccact-tttggatatttaatgacggaatggaactaatttctcattccattgtttaagaagttgatagaacagaa 8641  T
Q  444 tgagttataacttatttatttcaattttacccttttat 481  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  8642 tgagttataactt-tttatttcaattttacccttttat 8678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 325 - 477
Target Start/End: Original strand, 41222935 - 41223087
Alignment:
Q  325 aacggaatggaaaagaactgaatggaagggaacaatgatactattccactgtttggatattttatgatggaatggaccttattttccattctattgtttg 424  Q
    ||||||| ||||  |||| ||| |||| |||| || ||| | |||||| |||||||||| |||||||||||| ||| ||  |||||||||| ||||||||    
T  41222935 aacggaacggaatggaacggaacggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttg 41223034  T
Q  425 aaaagtcgagagaacggaatgagttataacttatttatttcaattttaccctt 477  Q
     |||||  |  |||||||| |||||||||||| |||||| |||||||||||||    
T  41223035 gaaagttaacggaacggaacgagttataacttttttattccaattttaccctt 41223087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 367 - 478
Target Start/End: Complemental strand, 48085316 - 48085206
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| ||||||||||||| | ||||||||| | || |||||||||||  ||||||||||| ||||  ||||||||| | ||||||||| |||||| ||    
T  48085316 attccattgtttggatattt-acgatggaatgaagctaattttccattcctttgtttgaaaaatcgacggaacggaattaattataacttttttattcca 48085218  T
Q  467 attttacccttt 478  Q
    ||||||||||||    
T  48085217 attttacccttt 48085206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 367 - 483
Target Start/End: Complemental strand, 31229107 - 31228992
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||||||||||||||||||||||  ||||| | |  ||||  || || |||||||| ||||| ||  ||||||||||||||||||| | |||||| ||    
T  31229107 attccactgtttggatattttatgagagaatgaaacaaatttcacaatccattgtttggaaagttgacggaacggaatgagttataacatttttattcca 31229008  T
Q  467 attttacccttttattt 483  Q
    |||||| ||||||||||    
T  31229007 atttta-ccttttattt 31228992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 50859508 - 50859398
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| |||||||||||||| ||| |||||| | || |||| ||| || ||| |||| ||||| ||  ||| ||||||||||||||||| |||||| ||    
T  50859508 attccattgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtggacggaatggaatgagttataacttttttattcca 50859409  T
Q  467 attttaccctt 477  Q
     ||||||||||    
T  50859408 tttttaccctt 50859398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 478
Target Start/End: Complemental strand, 35292741 - 35292637
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    ||||||||||||| | || |||||||| || |||| ||| || |||||||| |||||  | |||||||||   |||||||||| |||||| |||||||||    
T  35292741 tgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaagtgaacagaacggaacatgttataacttttttattccaattttac 35292642  T
Q  474 ccttt 478  Q
    |||||    
T  35292641 ccttt 35292637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 55842146 - 55842036
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    ||||||||||||||| ||||||||||||||||||    | || |||||| |||||||| ||| |  |  ||| | |  ||||||||||||||||||||||    
T  55842146 attccactgtttggacattttatgatggaatggaataaacttcccattcgattgtttggaaaatgaatggaaggaagagagttataacttatttatttca 55842047  T
Q  467 attttaccctt 477  Q
     ||||||||||    
T  55842046 tttttaccctt 55842036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 474
Target Start/End: Complemental strand, 13780032 - 13779932
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    |||||||||||||||  | |||||||| || |||||||| || |||||||| |||||  |  ||||||||||| |||||| || |||||| || ||||||    
T  13780032 tgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttac 13779933  T
Q  474 c 474  Q
    |    
T  13779932 c 13779932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 474
Target Start/End: Original strand, 35033214 - 35033314
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    |||||||||||||||  | |||||||| || |||||||| || |||||||| |||||  |  ||||||||||| |||||| || |||||| || ||||||    
T  35033214 tgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttac 35033313  T
Q  474 c 474  Q
    |    
T  35033314 c 35033314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 55777966 - 55777856
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||||||||||||  |||||||||||||||||    | || |||||| |||||||| ||| |  |  ||| | |  ||||||||||||||||||||||    
T  55777966 attccactgtttggactttttatgatggaatggaataaacttcccattcgattgtttggaaaatgaatggaaggaagagagttataacttatttatttca 55777867  T
Q  467 attttaccctt 477  Q
     ||||||||||    
T  55777866 tttttaccctt 55777856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 474
Target Start/End: Complemental strand, 25054864 - 25054764
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    ||||||| ||||||| ||||||||||| |  |||| ||| || ||| |||||||||| ||  |||  |||| | ||||||||| |||||| |||||||||    
T  25054864 tgtttgggtattttacgatggaatggaacaaatttaccactccattttttgaaaagttgacggaatagaataaattataacttttttattccaattttac 25054765  T
Q  474 c 474  Q
    |    
T  25054764 c 25054764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 339 - 482
Target Start/End: Complemental strand, 19848559 - 19848421
Alignment:
Q  339 gaactgaatggaagggaacaatgatactattccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaa 438  Q
    |||| |||||||| |||| || ||| | |||||| |||||||||| |||||||||||| ||| ||  |||||||||| |||||||| |||||      ||    
T  19848559 gaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagt-----taa 19848465  T
Q  439 cggaatgagttataacttatttatttcaattttacccttttatt 482  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||    
T  19848464 cggaacgagttataacttttttatttcaattttacccttatatt 19848421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 369 - 478
Target Start/End: Complemental strand, 12634164 - 12634055
Alignment:
Q  369 tccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaat 468  Q
    ||||||||||||||||||||||| | ||||||    ||||  ||||| |||||||| ||||||||  ||||||||||| ||||||| | |||||| ||||    
T  12634164 tccactgtttggatattttatgacgaaatggaataaatttcacattccattgtttggaaagtcgacggaacggaatgaattataacatttttattccaat 12634065  T
Q  469 tttacccttt 478  Q
    | ||||||||    
T  12634064 tatacccttt 12634055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 478
Target Start/End: Complemental strand, 19626203 - 19626099
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    |||||||||||||||  | |||||||| || |||||||| || |||||||| |||||  |  ||||||||||| |||||| || |||||| || ||||||    
T  19626203 tgtttggatattttactacggaatggaactaattttccactcaattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttac 19626104  T
Q  474 ccttt 478  Q
    |||||    
T  19626103 ccttt 19626099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 483
Target Start/End: Original strand, 260960 - 261002
Alignment:
Q  441 gaatgagttataacttatttatttcaattttacccttttattt 483  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  260960 gaatgagttataacttttttaattcaattttacccttttattt 261002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 28300734 - 28300843
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||||||||||| ||||||||||||||  |||    ||||||||||| |||||||| ||||| ||  ||| ||||| | ||||||||| |||||| ||    
T  28300734 attccactgtttgggtattttatgatggagcggaatgcattttccattccattgtttggaaagttgacggaatggaataaattataactt-tttattcca 28300832  T
Q  467 attttaccctt 477  Q
     ||||||||||    
T  28300833 tttttaccctt 28300843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 477
Target Start/End: Complemental strand, 5350450 - 5350342
Alignment:
Q  369 tccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaat 468  Q
    |||| ||||||| ||| ||||||||||  ||| |  ||||  |||||||||||||| ||||| ||   || ||||| ||||||||||| || ||||||||    
T  5350450 tccattgtttgggtatattatgatggatcggaacagatttctcattctattgtttggaaagttgacgaaatggaataagttataactttttaatttcaat 5350351  T
Q  469 tttaccctt 477  Q
    |||||||||    
T  5350350 tttaccctt 5350342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 374 - 478
Target Start/End: Original strand, 17999014 - 17999118
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    |||||||||||||||||| |||||||| || |||| |||||| |||||||||||||| ||  |||||| | | || ||||||| ||||||||| ||||||    
T  17999014 tgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagtggacggaacgggaagtgtcataacttttttatttcatttttac 17999113  T
Q  474 ccttt 478  Q
    |||||    
T  17999114 ccttt 17999118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 478
Target Start/End: Original strand, 28198555 - 28198659
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    |||||||||||||||  | |||||||| || |||||||| |  |||||||| |||||  |  ||||||||||| ||||||||| |||||| || ||||||    
T  28198555 tgtttggatattttactacggaatggaactaattttccacttcattgtttggaaagtgaatggaacggaatgatttataacttttttattccatttttac 28198654  T
Q  474 ccttt 478  Q
    |||||    
T  28198655 ccttt 28198659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 478
Target Start/End: Complemental strand, 28219791 - 28219680
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| |||||||||||| || |  |||||||| || |||| ||| || |||||||| ||||| ||  ||| | ||| ||||||||||| |||||||||    
T  28219791 attccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataacttttttatttca 28219692  T
Q  467 attttacccttt 478  Q
     |||||||||||    
T  28219691 tttttacccttt 28219680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 478
Target Start/End: Complemental strand, 10354954 - 10354843
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| ||||||||||||| | || |||||||| || |||| ||| || |||||||| || ||  |  ||||||||   |||||||||| |||||| ||    
T  10354954 attccattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaggtgaacggaacggaacatgttataacttttttattcca 10354855  T
Q  467 attttacccttt 478  Q
    ||||||||||||    
T  10354854 attttacccttt 10354843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 374 - 478
Target Start/End: Complemental strand, 44714110 - 44714006
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    ||||||||||||||| ||||||||||| || ||||| ||||||||||||||  || |  |  ||||||||||| |||||| || |||||| |||||||||    
T  44714110 tgtttggatattttacgatggaatggaactaatttttcattctattgtttggcaaatgaacggaacggaatgaattataatttttttattccaattttac 44714011  T
Q  474 ccttt 478  Q
    |||||    
T  44714010 ccttt 44714006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 478
Target Start/End: Original strand, 39439293 - 39439404
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| ||||||||||||| | || |||||| | || |||| ||| || ||||||||||||||  |  ||||||||   |||||||||| |||||| ||    
T  39439293 attccattgtttggatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaacggaacatgttataacttttttattcca 39439392  T
Q  467 attttacccttt 478  Q
    ||||||||||||    
T  39439393 attttacccttt 39439404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 2144555 - 2144664
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||||||||||| ||||||||||||||  |||    ||||||||||| |||||||| ||||| ||  ||| ||||| | ||||||||| |||||| ||    
T  2144555 attccactgtttgggtattttatgatggagcggaatgcattttccattccattgtttggaaagttgacggaatggaataaattataactt-tttattcca 2144653  T
Q  467 attttaccctt 477  Q
     ||||||||||    
T  2144654 tttttaccctt 2144664  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 366 - 415
Target Start/End: Complemental strand, 23420553 - 23420504
Alignment:
Q  366 tattccactgtttggatattttatgatggaatggaccttattttccattc 415  Q
    ||||||| ||||||||||||||||||||||||| | || |||||||||||    
T  23420553 tattccattgtttggatattttatgatggaatgaaactaattttccattc 23420504  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 24373430 - 24373526
Alignment:
Q  382 tattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttacccttt 478  Q
    ||||||| || |||||| | || |||| |||||| |||||||| ||||| ||  |||| |||  | ||||||||| |||||||||||||||||||||    
T  24373430 tattttacgacggaatgaaactaatttcccattccattgtttggaaagtggatggaacagaacaaattataacttttttatttcaattttacccttt 24373526  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 478
Target Start/End: Complemental strand, 25046160 - 25046056
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    |||||||||||||||  | ||||| || || |||||||| || |||||||  |||||  |  ||||||||||| ||||||||| |||||| || ||||||    
T  25046160 tgtttggatattttactacggaattgaactaattttccactccattgtttagaaagtgaatggaacggaatgatttataacttttttattccatttttac 25046061  T
Q  474 ccttt 478  Q
    |||||    
T  25046060 ccttt 25046056  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 478
Target Start/End: Complemental strand, 32279146 - 32279042
Alignment:
Q  374 tgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttac 473  Q
    |||||||||||||||  | ||||| || || |||||||| || |||||||| |||||  |  ||||||||||| ||||||||| || ||| || ||||||    
T  32279146 tgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataactttttcattccatttttac 32279047  T
Q  474 ccttt 478  Q
    |||||    
T  32279046 ccttt 32279042  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 479
Target Start/End: Original strand, 42028647 - 42028759
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| |||||||||||| || |  |||||||| || |||| ||| || |||||||| ||||| ||  ||| | ||| ||||||||||| |||||| ||    
T  42028647 attccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataacttttttattcca 42028746  T
Q  467 attttaccctttt 479  Q
     ||||||||||||    
T  42028747 tttttaccctttt 42028759  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 396
Target Start/End: Complemental strand, 25909580 - 25909551
Alignment:
Q  367 attccactgtttggatattttatgatggaa 396  Q
    ||||||||||||||||||||||||||||||    
T  25909580 attccactgtttggatattttatgatggaa 25909551  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 10872038 - 10871928
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||| | |||||||||||||||||||||||||    | |||| ||||||||||||| ||||| ||  ||| |||| |  |||||||||||||||| ||    
T  10872038 attccattatttggatattttatgatggaatggaataaactttcaattctattgtttggaaagtggatggaatggaaagcattataacttatttattcca 10871939  T
Q  467 attttaccctt 477  Q
     ||||||||||    
T  10871938 tttttaccctt 10871928  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 479
Target Start/End: Complemental strand, 29644716 - 29644613
Alignment:
Q  376 tttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttcaattttaccc 475  Q
    ||||||||||||||||  ||||| | || ||||| ||||| ||| |||||||||| ||  || | | |||||||||||||| |||||| ||||||||||     
T  29644716 tttggatattttatgagagaatgaaactaatttttcattccattatttgaaaagtagacggagcaggatgagttataacttttttattccaattttacct 29644617  T
Q  476 tttt 479  Q
    ||||    
T  29644616 tttt 29644613  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 10144869 - 10144760
Alignment:
Q  367 attccactgtttggatattttatgatggaatggaccttattttccattctattgtttgaaaagtcgagagaacggaatgagttataacttatttatttca 466  Q
    |||||||||||||| ||||||||||||||  |||    ||||||||||| ||| |||| ||||| ||  ||| ||||| | ||||||||| |||||| ||    
T  10144869 attccactgtttgggtattttatgatggagcggaatgcattttccattccattatttggaaagttgacggaatggaataaattataactt-tttattcca 10144771  T
Q  467 attttaccctt 477  Q
     ||||||||||    
T  10144770 tttttaccctt 10144760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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