View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20304_high_21 (Length: 272)

Name: NF20304_high_21
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20304_high_21
NF20304_high_21
[»] chr5 (3 HSPs)
chr5 (120-238)||(28093093-28093211)
chr5 (1-55)||(28093276-28093330)
chr5 (1-55)||(28093368-28093422)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 28093211 - 28093093
Alignment:
Q  120 atgtcagtaaatcacacacaacagtgcataatttgattgacagattataaagaaatggtatagccagaaaatggtattatgcagtaaaatattaaccaga 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28093211 atgtcagtaaatcacacacaacagtgcataatttgattgacagattataaagaaatggtatagccagaaaatggtattatgcagtaaaatattaaccaga 28093112  T
Q  220 aaatcggatttataggcag 238  Q
    |||||||||||||||||||    
T  28093111 aaatcggatttataggcag 28093093  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28093330 - 28093276
Alignment:
Q  1 aaaagtgtagcaaaacacaacggataaggtcgcacacaaaacacagattcccgca 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28093330 aaaagtgtagcaaaacacaacggataaggtcgcacacaaaacacagattcccgca 28093276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28093422 - 28093368
Alignment:
Q  1 aaaagtgtagcaaaacacaacggataaggtcgcacacaaaacacagattcccgca 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28093422 aaaagtgtagcaaaacacaacggataaggtcgcacacaaaacacagattcccgca 28093368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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