View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_high_25 (Length: 241)
Name: NF20304_high_25
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8578179 - 8578408
Alignment:
| Q |
1 |
cttgtatgcaagaaggacgaaaaccactaattgcagtaaatatttaaagcaaataaataactttattcattgtaatttcatgtaacgttgaaattgaatc |
100 |
Q |
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| T |
8578179 |
cttgtatgcaagaaggacgaaaaccactaattgcagtaaatatttaaagcaaataaataactttattcattgtaatttcatgtaacgttgaaattgaatc |
8578278 |
T |
|
| Q |
101 |
agttg--gactgactctaagttaatgttgatgccattttctaacaattctctattctaatacctaagtaaccataaatgcttaattttaaaaagttac-t |
197 |
Q |
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| T |
8578279 |
agttggagactgactctaagttaatgttgatgccattttctaacaattctctattctaatacctaagtaacaatacatgcttaattttaaaaaattactt |
8578378 |
T |
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| Q |
198 |
ttttggcatgaattttgtgttgtgattttt |
227 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
8578379 |
ttttggcatgaattttgtgttgtgattttt |
8578408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 8592852 - 8593062
Alignment:
| Q |
19 |
gaaaaccactaattgcagtaaatatttaaagcaaataaataactttattcattgtaatttcatgtaacgttgaaattgaatcagttgga--ctgactcta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |
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| T |
8592852 |
gaaaaccactaattgcagtaaatatttaaagcaaataaataattttattcattgtattttcatgtaacgttgaaattgaatcagttggagaccaactcta |
8592951 |
T |
|
| Q |
117 |
agttaatgttgatgccattttctaacaattctctattctaatacctaagtaaccataaatgcttaattttaaaaagttactttttggcatgaattttgtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8592952 |
agttaatgttgatgccattttctaacaattctctattctaatacctaagtaacaatacatgctttattttaaaaagttactttttggcatgaattttgtg |
8593051 |
T |
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| Q |
217 |
ttgtgattttt |
227 |
Q |
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||||||||||| |
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| T |
8593052 |
ttgtgattttt |
8593062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 8560876 - 8560780
Alignment:
| Q |
1 |
cttgtatgcaagaaggacgaaaaccactaattgcagtaaatatttaaagcaaataaataactttattcattgtaatttcatgtaacgttgaaattgaatc |
100 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||| |||| |
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| T |
8560876 |
cttgtatgcaagaagaacgaaaaccattaattgcagtaaatatttaaagcaa----ataactttattcattataacttaatgtaacgttgaaattaaatc |
8560781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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