View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20304_high_30 (Length: 216)

Name: NF20304_high_30
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20304_high_30
NF20304_high_30
[»] chr5 (15 HSPs)
chr5 (1-216)||(36475770-36475985)
chr5 (1-155)||(36492735-36492891)
chr5 (138-216)||(36435900-36435978)
chr5 (155-216)||(36475960-36476021)
chr5 (88-176)||(36493028-36493116)
chr5 (138-216)||(36436020-36436098)
chr5 (182-216)||(36445808-36445842)
chr5 (154-194)||(36475995-36476035)
chr5 (182-216)||(36435866-36435900)
chr5 (140-186)||(36435980-36436026)
chr5 (142-191)||(36435694-36435743)
chr5 (140-176)||(36435650-36435686)
chr5 (138-186)||(36435879-36435927)
chr5 (140-176)||(36445550-36445586)
chr5 (138-190)||(36445821-36445873)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 36475770 - 36475985
Alignment:
Q  1 ttattcatggaatttagtactagaaagagtgcatcatgcatgatcatagcattatgatcagttttgagtattgtccttagcttgcatggcaacaaattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36475770 ttattcatggaatttagtactagaaagagtgcatcatgcatgatcatagcattatgatcagttttgagtattgtccttagcttgcatggcaacaaattca 36475869  T
Q  101 gcatgtgagcagcaccttccatggcaatggtattggcaaccacctccaccgtggttgtaaccgcctccaccatggttgtagccaccaccattgtaaccac 200  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36475870 gcatgcgagcagcacctgccatggcaatggtattggcaaccacctccaccgtggttgtaaccgcctccaccatggttgtagccaccaccattgtaaccgc 36475969  T
Q  201 ctccaccatggttgta 216  Q
    ||||||||||||||||    
T  36475970 ctccaccatggttgta 36475985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 36492735 - 36492891
Alignment:
Q  1 ttattcatggaatttagtacta-gaaagagtgcatcatg-catgatcatagcattatgatcagttttgagtattgtccttagcttgcatggcaacaaatt 98  Q
    ||||||||| |||||| || || |||||||||||||||  |||||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||||    
T  36492735 ttattcatgaaatttattattaagaaagagtgcatcataacatgatcatagcattatgatcaattctgagttttgtcctcagcttgcacggcaacaaatt 36492834  T
Q  99 cagcatgtgagcagcaccttccatggcaatggtattggcaaccacctccaccgtggt 155  Q
    ||||||||||||||||    |||||||||| ||| ||||||||||||||||| ||||    
T  36492835 cagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggt 36492891  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 36435900 - 36435978
Alignment:
Q  138 aaccacctccaccgtggttgtaaccgcctccaccatggttgtagccaccaccattgtaaccacctccaccatggttgta 216  Q
    ||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||| |||||||||||||||||    
T  36435900 aaccacctccaccgtggttgtaaccacctccgccgtggttgtaaccaccaccattgtaacctcctccaccatggttgta 36435978  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 36475960 - 36476021
Alignment:
Q  155 ttgtaaccgcctccaccatggttgtagccaccaccattgtaaccacctccaccatggttgta 216  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36475960 ttgtaaccgcctccaccatggttgtagccaccaccgttgtaaccacctccaccatggttgta 36476021  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 36493028 - 36493116
Alignment:
Q  88 ggcaacaaattcagcatgtgagcagcaccttccatggcaatggtattggcaaccacctccaccgtggttgtaaccgcctccaccatggt 176  Q
    ||||||||||||||||| |||||||||    |||||||||| ||| || |||||||||||||||||||   |||| |||||||| ||||    
T  36493028 ggcaacaaattcagcatatgagcagcaatggccatggcaatagtaatgacaaccacctccaccgtggtgagaaccacctccaccgtggt 36493116  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 36436020 - 36436098
Alignment:
Q  138 aaccacctccaccgtggttgtaaccgcctccaccatggttgtagccaccaccattgtaaccacctccaccatggttgta 216  Q
    ||||||||||||||| ||||||||| || || || ||||| || || |||||||| |||||||| ||||| ||||||||    
T  36436020 aaccacctccaccgttgttgtaaccaccaccgccgtggttataacctccaccattataaccaccaccaccgtggttgta 36436098  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 36445808 - 36445842
Alignment:
Q  182 ccaccaccattgtaaccacctccaccatggttgta 216  Q
    |||||||||||||||||||||||||||||||||||    
T  36445808 ccaccaccattgtaaccacctccaccatggttgta 36445842  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 36475995 - 36476035
Alignment:
Q  154 gttgtaaccgcctccaccatggttgtagccaccaccattgt 194  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  36475995 gttgtaaccacctccaccatggttgtatccaccaccattgt 36476035  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 36435866 - 36435900
Alignment:
Q  182 ccaccaccattgtaaccacctccaccatggttgta 216  Q
    ||||||||||||||||||||||| |||||||||||    
T  36435866 ccaccaccattgtaaccacctccgccatggttgta 36435900  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 36435980 - 36436026
Alignment:
Q  140 ccacctccaccgtggttgtaaccgcctccaccatggttgtagccacc 186  Q
    ||||||||||||| ||||||||| || |||||||||||||| |||||    
T  36435980 ccacctccaccgttgttgtaaccaccaccaccatggttgtaaccacc 36436026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 36435694 - 36435743
Alignment:
Q  142 acctccaccgtggttgtaaccgcctccaccatggttgtagccaccaccat 191  Q
    |||||| || ||||||||||  ||||||||||||||||| ||||||||||    
T  36435694 acctcctccatggttgtaactacctccaccatggttgtaaccaccaccat 36435743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 36435650 - 36435686
Alignment:
Q  140 ccacctccaccgtggttgtaaccgcctccaccatggt 176  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  36435650 ccacctccaccgtggttgtaaccacctccaccgtggt 36435686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 36435879 - 36435927
Alignment:
Q  138 aaccacctccaccgtggttgtaaccgcctccaccatggttgtagccacc 186  Q
    |||||||||| || ||||||||||| |||||||| |||||||| |||||    
T  36435879 aaccacctccgccatggttgtaaccacctccaccgtggttgtaaccacc 36435927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 36445550 - 36445586
Alignment:
Q  140 ccacctccaccgtggttgtaaccgcctccaccatggt 176  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  36445550 ccacctccaccgtggttgtaaccacctccaccgtggt 36445586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 36445821 - 36445873
Alignment:
Q  138 aaccacctccaccgtggttgtaaccgcctccaccatggttgtagccaccacca 190  Q
    ||||||||||||| ||||||||||| |||||||| | || ||| |||||||||    
T  36445821 aaccacctccaccatggttgtaaccacctccaccgttgtggtaaccaccacca 36445873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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