View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20304_low_1 (Length: 807)

Name: NF20304_low_1
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20304_low_1
NF20304_low_1
[»] chr3 (2 HSPs)
chr3 (116-791)||(28448578-28449245)
chr3 (11-119)||(28448391-28448499)


Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 116 - 791
Target Start/End: Original strand, 28448578 - 28449245
Alignment:
Q  116 ctttttatctctcaagataaattattagtaacattaataaaagatatgttggaggnnnnnnntaaatacactaataatttgtataaaagcttatattaag 215  Q
    |||||||||| ||||||||||||| ||   |||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||    
T  28448578 ctttttatctttcaagataaattaata---acattaataaaagatatgttcgaggaaaaaaataaatacactaataatttgtataaaagcttatattaag 28448674  T
Q  216 agacaccttttcctttcaaattaacttagaattatggacggaagaagtaatttacatgattgctgtttaagattataaacattttaagaatatccagttc 315  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||| |||||||| |||||| ||| |    
T  28448675 agacactttttcctttcaaattaacttagaattatggatggaagaactaatttacataattgttgtttaagattataatcattttaaaaatatcaagtac 28448774  T
Q  316 ctgcccnnnnnnnnnnnaagggaatcaagtacttgcacttgtacatatttgaaaactatcaagtacatatagttttatgataaaattaaattgtatttac 415  Q
     ||| |           |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28448775 ttgcacttttttttt--aagggaatcaagtacttgcacttgtacacatttgaaaattatcaagtacatatagttttatgataaaattaaattgtatttac 28448872  T
Q  416 taaaaacactcttatgannnnnnnnnnggttgnnnnnnncact--tatgaataacattagaagaaactaacaaaaatacttacacattattcattgttag 513  Q
    |||||||||||||||||           ||||       ||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28448873 taaaaacactcttatgattttttttt--gttgaaaaaaacactcttatgaataacattagaagaaactaacaaaaatacttacatattattcattgttag 28448970  T
Q  514 tcttaattttgtacgcctataggtaaattaatttgagttgtgtaagactaaaataaacggaagnnnnnnnnngtcttgatgtgcgtgcttagtaagtaag 613  Q
    |||||||||||| ||| ||||| |||||||||||||| |||||||||||| |||| || ||||         |||||||||||||||||||| |||||||    
T  28448971 tcttaattttgtgcgcatatagataaattaatttgagctgtgtaagactacaatagaccgaagaaaaaaa--gtcttgatgtgcgtgcttagcaagtaag 28449068  T
Q  614 gactacaataaaagattaannnnnnnaaacaaagattaatttagtgagactaaaataaattattaatgtaatagacttacatcaattatgaaccttaata 713  Q
    ||||| | |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28449069 gactatagtaaaagattaatttttttaaacaaagattaatttagtgagactaaaataaattattaatgtaatagacttacatcaattatgaaccttaat- 28449167  T
Q  714 aaaatataatttggtccttgaaaagtgtaattgnnnnnnnattatatttgtcatttgaaaataaattttaccaatttg 791  Q
    |||||||||||||||||||||||| ||||||||       |||||||||||| |||||||||||||||||||||||||    
T  28449168 aaaatataatttggtccttgaaaattgtaattgtttttttattatatttgtcttttgaaaataaattttaccaatttg 28449245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 28448391 - 28448499
Alignment:
Q  11 agcagagagtggagaaagatggcaactggcaaagagagagtgggacaattcgggggatatcatggacaaccttatctagttatctaaatctaccttatat 110  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28448391 agcaaagagtggagaaagatggcaattggcagagagagagtgggacaattcgggggatatcatggacaaccttatctagttatctaaatctaccttatat 28448490  T
Q  111 tcttacttt 119  Q
    |||||||||    
T  28448491 tcttacttt 28448499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University