View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20304_low_10 (Length: 384)

Name: NF20304_low_10
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20304_low_10
NF20304_low_10
[»] chr3 (1 HSPs)
chr3 (10-367)||(40859574-40859907)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 40859574 - 40859907
Alignment:
Q  10 attatactcaccaaaactacaacagtattctgttgcaaacttacaaggtaaaaatattaccccagtaattgtaagttgtagggaagctaagtaatcagtc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40859574 attatactcaccaaaactacaacagtattctgttgcaaacttacaaggtaaaaatattaccccagtaattgtaagttgtagggaagctaagtaatcagtc 40859673  T
Q  110 ttcttaccttcatttgagaagttggctatattaattatagcccaagttttagatagtgctacctcccactttcaaaaccatttctacttattttcgcttc 209  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40859674 ttcttaccttcatttgagaagttggctat-----ttatagcccaagttttagatagtgctacctcccactttcaaaaccatttctacttattttcgcttc 40859768  T
Q  210 cctctcattcttaccgatccttcataaatatccctaagtttatcacaaccctattaacttcgtatattttacaaaaacttttagaaaacaagtggcaccc 309  Q
    |||||||||||||||||||||||||||||                   ||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  40859769 cctctcattcttaccgatccttcataaat------------------tcccaattaacttcgtatattttac-aaaacttttagaaaacaagtggcaccc 40859849  T
Q  310 aaattcccaannnnnnnatattaaacttattcacttgttgcattaattcaataccaag 367  Q
    ||||||||||       ||||||||||| |||||||||||||||||||||||||||||    
T  40859850 aaattcccaatttttttatattaaacttcttcacttgttgcattaattcaataccaag 40859907  T

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