View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20304_low_15 (Length: 327)
Name: NF20304_low_15
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 45318660 - 45318960
Alignment:
| Q |
19 |
catgtttcatctctacttgtagaaacaggtaataaagacgaaaagtgtggcattcatgccgctaaatttgtctttctttttgaccttaaatgctattgtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45318660 |
catgtttcatctctacttgtagaaacaggtaataaagacgaaaagtgtagcattcatgccgctaaatttgtctttctttttgaccttaaatgctattgtg |
45318759 |
T |
|
| Q |
119 |
tggttcttctatggtcttcttatcgacgacttttatatcgctgtaagttcattcaatattgttacatagtaaataattgttgtctaattacaatctagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45318760 |
tggttcttctatggtcttcttatcgacgacttttatatcgctgtaagttcattcaatattgttacatagtaaataattgttgtctaattacaatctagga |
45318859 |
T |
|
| Q |
219 |
aatgctttgcttttaacttacgataattttggtatttatatttttataccgaaaaattgaaaataacaataatgaaagaaaggtgttttattgtctgtgc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
45318860 |
aatgctttgcttttaacttacgataattttggtatttatatttttataccgaaaaattgaaaataacaataatgaaagaaagatgttttattgtttgtgc |
45318959 |
T |
|
| Q |
319 |
t |
319 |
Q |
| |
|
| |
|
|
| T |
45318960 |
t |
45318960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University