View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_16 (Length: 318)
Name: NF20304_low_16
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 4 - 303
Target Start/End: Original strand, 9816703 - 9817003
Alignment:
| Q |
4 |
atgaatatatggtattcagattgcacaaagcaaagtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaaga |
103 |
Q |
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| T |
9816703 |
atgaatatatggtattcagattgcacaaagcaaagtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaaga |
9816802 |
T |
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| Q |
104 |
tttt-ttcaaatacaaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatgatttagtggaaac |
202 |
Q |
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| T |
9816803 |
tttttttcaaatacaaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatgatttagtgaaaac |
9816902 |
T |
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| Q |
203 |
tgaaagcaatttatctgaggtagatgaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaa |
302 |
Q |
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| T |
9816903 |
tgaaagcaatttatctgaggtagatgaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaaggttaacatatttctttggaatagaa |
9817002 |
T |
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| Q |
303 |
t |
303 |
Q |
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| T |
9817003 |
t |
9817003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 303
Target Start/End: Complemental strand, 16944340 - 16944151
Alignment:
| Q |
116 |
caaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatgatttagtggaaactgaaagcaattta |
215 |
Q |
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| T |
16944340 |
caaagttgaatatggtctgtatttgaaaaataacaaaggttataatcttgtgcttatctatctatatgttgataatttagtggtaactagaagcaattta |
16944241 |
T |
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| Q |
216 |
tctgaggtagat--gaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaat |
303 |
Q |
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| T |
16944240 |
gcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaat |
16944151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 303
Target Start/End: Complemental strand, 17015005 - 17014816
Alignment:
| Q |
116 |
caaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatcaatattttgatgatttagtggaaactgaaagcaattta |
215 |
Q |
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| T |
17015005 |
caaagttgaatatggtctgtatttgaaaaataacaaaggttataatcttgtgcttatctatctatatgttgataatttagtggtaactagaagcaattta |
17014906 |
T |
|
| Q |
216 |
tctgaggtagat--gaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaat |
303 |
Q |
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| T |
17014905 |
gcttagatatacaagaattcaaaagacaaatgatgaaagaattggacatgacttatttgggaaagttaccatacttccttggaatagaat |
17014816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 276
Target Start/End: Complemental strand, 15490745 - 15490547
Alignment:
| Q |
78 |
attgacaactttctagttcaagaagattttttcaaatacaaagatgaaaatgttatgtatgtgaagaatagcaaatgctattatgtggtgtttatctatc |
177 |
Q |
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| T |
15490745 |
attgacaactttctagttcaataggaatttgtcaaatgcaaagttgaatattgtttgtatgtgaagaataacaaaggtagaaatctgatgcttatttgtc |
15490646 |
T |
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| Q |
178 |
aatattttgatgatttagtggaaactgaaagcaatttatctgaggtagatgaattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaa |
276 |
Q |
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| T |
15490645 |
tatatgttgatgatttcgtggtaactggaaccaatataattgagaaagaagaattcataagacaaatgatgagagaatttgatatggctgatttgggaa |
15490547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 1831616 - 1831690
Alignment:
| Q |
229 |
aattcaaaagacaaatgatgaaagagtttgacatgactggtttgggaagtttaacatatttctttggaatagaat |
303 |
Q |
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||||||||||||||||||||| ||| ||||| ||||||| |||||||| |||||||||||| |||||| |||| |
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| T |
1831616 |
aattcaaaagacaaatgatgacagaatttgagatgactgatttgggaaagttaacatatttccctggaatggaat |
1831690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 1831422 - 1831482
Alignment:
| Q |
38 |
gtatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaa |
98 |
Q |
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|||||| |||||| | |||| |||||| |||||||||||||| | ||| |||||||||||| |
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| T |
1831422 |
gtatggattgaagcaagctccaagagcatggaacaaaaggatggtcaagtttctagttcaa |
1831482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 15566171 - 15566058
Alignment:
| Q |
39 |
tatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaagattttttcaaatacaaagatgaaaatgttatgtatg |
138 |
Q |
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|||||||||||| | |||| |||||||||||| || ||||||||||||||||| || || || | ||| |||||| ||||| |||| ||| | | |||| |
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| T |
15566171 |
tatggtttgaagcaagctccaagagcctggaataagaggattgacaactttcttgtgcagcaatactttgtcaaatgcaaagctgaatatggtgtctatg |
15566072 |
T |
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| Q |
139 |
tgaagaatagcaaa |
152 |
Q |
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|||| ||||||||| |
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| T |
15566071 |
tgaaaaatagcaaa |
15566058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 259
Target Start/End: Complemental strand, 11753558 - 11753462
Alignment:
| Q |
163 |
tggtgtttatctatcaatattttgatgatttagtggaaactgaaagcaatttatctgaggtagatgaattcaaaagacaaatgatgaaagagtttga |
259 |
Q |
| |
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||||| |||||| || |||| ||||| || |||||| ||| |||||||||| ||||| |||| ||||||||||||| ||||||||||||||||| |
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| T |
11753558 |
tggtgcttatctgtctatatgttgattatctagtggtcactagaagcaatttacctgagatagaataattcaaaagacagatgatgaaagagtttga |
11753462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 30064976 - 30065062
Alignment:
| Q |
39 |
tatggtttgaagtatgctctaagagcctggaacaaaaggattgacaactttctagttcaagaagattttttcaaatacaaagatgaa |
125 |
Q |
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| T |
30064976 |
tatggtttgaagcaatctctaagagcatggaataagaggattgtcaactttctagtgcagcaagaatttgtcaaatgcaaagctgaa |
30065062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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