View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20304_low_17 (Length: 317)

Name: NF20304_low_17
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20304_low_17
NF20304_low_17
[»] chr5 (1 HSPs)
chr5 (11-302)||(40025767-40026058)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 40025767 - 40026058
Alignment:
Q  11 ttattctcaacttgattaacttctattgtgtcacttgattcattgggtgaagacacattaagactattatcaagagattcaaaatctgtttcagaaccat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  40025767 ttattctcaacttgattaacttctattgtgtcacttgattcattgggtgaagacacattaagactattatcaagagattcaaaatctgtttcagaagcat 40025866  T
Q  111 cttctgtctgtttcaccaccttgcatgactcaacatgttcatcaatatcaacaacatcttcggtatcaccgataaacttggattttccatcacaatcatc 210  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40025867 cttctgtctgttccaccaccttgcatgactcaacatgttcatcaatatcaacaacatcttcggtatcaccgataaacttggcttttccatcacaatcatc 40025966  T
Q  211 atcagcagatacttcaacagctacccccttatcttcacttgatgattcttcttcaaccttttgtgtttcatgcaatgttccattgaaatttc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40025967 atcagcagatacttcaacagctacccccttatcttcacttgatgattcttcttcaaccttttgtgtttcatgcaatgttccattgaaatttc 40026058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University