View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_18 (Length: 301)
Name: NF20304_low_18
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 40838618 - 40838350
Alignment:
| Q |
10 |
agtagcatagggaatccagctgattgaacaaatgttgccatccatttactattaccacctttgtcataatatagtcttcccagaagattggctgtagatt |
109 |
Q |
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| T |
40838618 |
agtagtatagggaatccagctgattgaacaaatgttgccatccatttactattaccacctttgtcataatatagtcttcccagaagattggctgtagatt |
40838519 |
T |
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| Q |
110 |
gacctaccaaaagaaatactatgtagagagatacacgaaaccaccatttgaaatctcttaatctttgatgttcaggttcttcannnnnnncctctgataa |
209 |
Q |
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| T |
40838518 |
gacctaccaaaagaaatactatgtagagagatacacgaaaccaccatttgaaatctcttaatctttgatgttgaggttcttcatttttttcctctgatat |
40838419 |
T |
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| Q |
210 |
aatagtgaacagagaatagtgaacaccaaaacagattaaaatagtaaagaaataatgacgcaaatgatgaaca |
282 |
Q |
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| T |
40838418 |
gat-ttg---ttagaacagtgaacaccaaaacagattaaaatagtaaagaaataatgacgcaaatgatgaaca |
40838350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 4583486 - 4583620
Alignment:
| Q |
22 |
aatccagctgattgaacaaatgttgccatccatttactattaccacctttgtcataatatagtcttcccagaagattggctgtagattgacctaccaaaa |
121 |
Q |
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| T |
4583486 |
aatccagctgattgaacaaatgatatcatccatttgctcttaccacctttgtcataatataacctttccaaaagaagggaagaagattggcctaccaaaa |
4583585 |
T |
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| Q |
122 |
gaaatactatgtagagagatacacgaaaccaccat |
156 |
Q |
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| T |
4583586 |
ggaaaattatgtagaggattacacgaaaccaccat |
4583620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 23335858 - 23335920
Alignment:
| Q |
33 |
ttgaacaaatgttgccatccatttactattaccacctttgtcataatatagtcttcccagaag |
95 |
Q |
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|||||||| ||||||||||||||||| || || ||||| |||||||||| |||||| ||||| |
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| T |
23335858 |
ttgaacaacggttgccatccatttactctttcctcctttttcataatataatcttcctagaag |
23335920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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