View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_20 (Length: 289)
Name: NF20304_low_20
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 143493 - 143754
Alignment:
| Q |
12 |
atgaatgaacattataataaccggtggaaacattatatgggaatgttgagatcagtgtattttcgtgatccttggagaatcagttcaactgttgttggaa |
111 |
Q |
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| T |
143493 |
atgaatgaacattataataactggtggaaacattatatgggaatgttgagatcagtgtattttcgtgatccttggagaatcagttcaactgttgttggaa |
143592 |
T |
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| Q |
112 |
ttgcaattttcttatttgctgctgtcaattttcttagagttattggtgtatttcgtttgaagtagttcttagtactagttgattttgttagaatttcaaa |
211 |
Q |
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| T |
143593 |
ttgcaattttcttatttgctgctgtcaattttcttagagttattggtgtatttcgtttgaagtagttcttagtactagttgattttgttagaatttccaa |
143692 |
T |
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| Q |
212 |
acatatcttattatttttcatgaattatatatatgttatgtaatgttaacattcacagtttgtatg |
277 |
Q |
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| T |
143693 |
acatatcttattatttttcatgaat----tatatgttatgtaatgttaacattcacagtttgtatg |
143754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 106324 - 106251
Alignment:
| Q |
36 |
tggaaacattatatgggaatgttgagatcagtgtattttcgtgatccttggagaatcagttcaactgttgttgg |
109 |
Q |
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| T |
106324 |
tggaagcattatatgggaatgctgagatcagtttattttcgtgatccttggagattcagctcaactattgttgg |
106251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 45958168 - 45957935
Alignment:
| Q |
12 |
atgaatgaacattataataaccggtggaaacattatatgggaatgttgagatcagtgtattttcgtgatccttggagaatcagttcaactgttgttggaa |
111 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||||||||| |||| | |||||||||||||| |||| |
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| T |
45958168 |
atgaatgaacattataataactggtggaaacattatatgggaatgttaaggtcagtgtactttcgtgatcctcggaggcttagttcaactgttgtgggaa |
45958069 |
T |
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| Q |
112 |
ttgcaattttcttatttgctgctgtcaattttcttagagttattggtgtatttcgtttgaagtagttc----ttagtactagttgattttgttagaattt |
207 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| || |||||||||||||||||||||||||||| |
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| T |
45958068 |
ttgctattttcttatttgctgttgtcaattttcttagagttattggtgcagttcgtctgaagtaattaatttttagtactagttgattttgttagaattt |
45957969 |
T |
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| Q |
208 |
caaaacatatcttattatttttcatgaattatat |
241 |
Q |
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| T |
45957968 |
ccacacatatcatattatttttcatgaattatat |
45957935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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