View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_22 (Length: 246)
Name: NF20304_low_22
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 3339642 - 3339860
Alignment:
| Q |
2 |
atatccatcgttgatgaaatccacaatgcatgtggaataataattagtaacatcaagagaaaatatcaaaaatcatgatggggtgggaacaaaaataaaa |
101 |
Q |
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| T |
3339642 |
atatccatggttgataaaatccacaatgcatgtggaataataattagtaaaat------aaaataa-aaaaatcatgatggggtgggaacaaaaataaaa |
3339734 |
T |
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| Q |
102 |
tgtgtctcaaaaagtacatgcctaaatggtgttcccttcaattttgacataatttggtacctcatatgtcctactaattaccagacacacttcaacattg |
201 |
Q |
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| T |
3339735 |
tgtgtctcaaaaagtacatgcctaaatggtgttcccttcaattttgacataatttggtacctcatatg---tactaattaccagacacacttcaacattg |
3339831 |
T |
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| Q |
202 |
taatgagaacatggaaaaaatagttttct |
230 |
Q |
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| T |
3339832 |
taatgagaacatggaaaaaatagttttct |
3339860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 3344991 - 3345054
Alignment:
| Q |
167 |
atgtcctactaattaccagacacacttcaacattgtaatgagaacatggaaaaaatagttttct |
230 |
Q |
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| T |
3344991 |
atgtcctagtaattaccagacacacctcagcattgtaatgagaaaatggaagaaataattttct |
3345054 |
T |
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