View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_23 (Length: 244)
Name: NF20304_low_23
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 8578006 - 8577844
Alignment:
| Q |
1 |
gtgaaacctttgagtatttgttaatttttgtatgaaaaatgtcacgttatctcgtaaatatcaatacaagtgtttgcagaaatatgaaagaaattgtttc |
100 |
Q |
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| T |
8578006 |
gtgaaaacttggagtatttgttaatttttgtatgaaaaatgtcacgttatctcataaatatcaatacaagtgtttgcagaaatatgaaagaaattgtttc |
8577907 |
T |
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| Q |
101 |
attaataaggaattgacgtgaaattatttttctcttccttcttagctgatatccactacatag |
163 |
Q |
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| T |
8577906 |
attaataaggaattgacgtgaaattgtttttctcttccttcttagctgatatccactacatag |
8577844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 8561176 - 8561296
Alignment:
| Q |
35 |
aaaaatgtcacgttatctcgtaaatatcaatacaagtgtttgcagaaatatgaaagaaattgtttcattaataaggaattgacgtgaaattatttttctc |
134 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
8561176 |
aaaaatgtcacgttatctcataaatatcaataaaagtgtttgcagaaatatgaaagaaattgtttcactaataaggaattgacgtgaaattgtttttctc |
8561275 |
T |
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| Q |
135 |
ttccttcttagctgatatcca |
155 |
Q |
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| T |
8561276 |
ttccttcttagctgatatcca |
8561296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8592656 - 8592560
Alignment:
| Q |
1 |
gtgaaacctttgagtatttgttaatttttgtatgaaaaatgtcacgttatctcgtaaatatcaatacaagtgtttgcagaaatatgaaagaaattgt |
97 |
Q |
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| T |
8592656 |
gtgaaaacttggagtatttgttaatttttgtatgaaaaatgtcacgttatctcataaatatcaacacaagtgtttgcagaaatataaaagaaattgt |
8592560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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