View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20304_low_29 (Length: 219)
Name: NF20304_low_29
Description: NF20304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20304_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 48176406 - 48176219
Alignment:
| Q |
19 |
agactactaaccagtggtctcaagttgaaacggaagtgtgattgtatgccctttgaacagctctttcgctcttgtcgcgacacctcttgtgtcaattctt |
118 |
Q |
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| T |
48176406 |
agactactaaccagtggtctcaagttgaaacggaagtgtgattgtatgccctttgaacagctctttcgctcttgtcgtgacacctcttgtgtcaattctt |
48176307 |
T |
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| Q |
119 |
tgagcctggaaatccatcatgacttttaaaaactcatcatatgcaccatcatcgccaactctagaagaatcaccagagaacttcatct |
206 |
Q |
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| T |
48176306 |
tgagcctggaaatccatcatgacttttaaaaactcatcatatgcaccatcatcgccaactctagaagaatcaccagagaacttcatct |
48176219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 49444171 - 49444211
Alignment:
| Q |
21 |
actactaaccagtggtctcaagttgaaacggaagtgtgatt |
61 |
Q |
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||||||||||||||||||||| |||||| |||||||||||| |
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| T |
49444171 |
actactaaccagtggtctcaaattgaaatggaagtgtgatt |
49444211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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